Variant report

Variant	rs1465900
Chromosome Location	chr11:76473138-76473139
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76466515..76473526-chr11:76475390..76481084,8	K562	blood:
2	chr11:76471872..76474464-chr11:76492818..76494960,2	K562	blood:

Variant related genes	Relation type
ENSG00000182704	Chromatin interaction
ENSG00000254632	Chromatin interaction
ENSG00000255100	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10160660	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10160769	1.00[EUR][1000 genomes]
rs10437754	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793194	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793195	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10899278	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899279	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899280	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10899281	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10899282	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10899283	0.84[CHD][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11236923	0.90[ASN][1000 genomes]
rs11236924	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236936	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12273016	0.87[ASW][hapmap];0.90[CHD][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs12282785	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12290350	0.94[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[LWK][hapmap];0.94[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12788118	0.87[EUR][1000 genomes]
rs1440977	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1440978	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1440979	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1440980	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1837679	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1837680	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1866843	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3758711	0.94[CEU][hapmap];0.90[CHD][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4309181	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56228827	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7107409	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs737185	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7933092	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7942337	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7942368	0.97[EUR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76457000-76474600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:76461000-76473800	Weak transcription	Small Intestine	intestine
3	chr11:76464200-76473600	Weak transcription	Right Ventricle	heart
4	chr11:76464800-76474000	Weak transcription	Left Ventricle	heart
5	chr11:76464800-76474000	Weak transcription	Spleen	Spleen
6	chr11:76464800-76474200	Weak transcription	Fetal Lung	lung
7	chr11:76465200-76473800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:76465400-76474200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:76467800-76478400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr11:76468000-76474400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:76468200-76474200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:76468800-76474400	Weak transcription	HSMMtube	muscle
13	chr11:76469200-76473400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:76470000-76475000	Weak transcription	Fetal Brain Female	brain
15	chr11:76470200-76474800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:76470200-76479000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:76470400-76474400	Weak transcription	Placenta	Placenta
18	chr11:76470400-76475000	Weak transcription	Fetal Brain Male	brain
19	chr11:76470600-76482000	Weak transcription	Psoas Muscle	Psoas
20	chr11:76471000-76475000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr11:76471200-76474000	Weak transcription	Stomach Mucosa	stomach
22	chr11:76471400-76473600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr11:76471600-76474800	Weak transcription	K562	blood
24	chr11:76471600-76475000	Weak transcription	Fetal Heart	heart
25	chr11:76472200-76473200	Weak transcription	A549	lung
26	chr11:76472200-76473600	Weak transcription	Esophagus	oesophagus
27	chr11:76472200-76474400	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr11:76472200-76477200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr11:76472600-76473200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr11:76472600-76473400	Enhancers	Fetal Muscle Leg	muscle
31	chr11:76472600-76474400	Enhancers	Liver	Liver
32	chr11:76473000-76474000	Weak transcription	Fetal Muscle Trunk	muscle
33	chr11:76473000-76474800	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr11:76473000-76478600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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