Variant report

Variant	rs3758711
Chromosome Location	chr11:76495560-76495561
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr11:76492909-76496222	IMR90	lung:	n/a	chr11:76495006-76495021
2	YY1	chr11:76494993-76495754	HepG2	liver:	n/a	chr11:76495161-76495172 chr11:76495448-76495462
3	BCL3	chr11:76494951-76496284	A549	lung:	n/a	chr11:76495048-76495061 chr11:76494952-76494965
4	MAX	chr11:76493397-76495849	Hela-S3	cervix:	n/a	chr11:76495789-76495799 chr11:76494160-76494170 chr11:76494949-76494959 chr11:76494703-76494719
5	CTCF	chr11:76495500-76495650	HUVEC	blood vessel:	n/a	n/a
6	TAF1	chr11:76493845-76495826	H1-hESC	embryonic stem cell:	n/a	n/a
7	TBP	chr11:76493968-76495623	H1-hESC	embryonic stem cell:	n/a	n/a
8	CTCF	chr11:76495476-76495645	MCF-7	breast:	n/a	n/a
9	HEY1	chr11:76495385-76495845	K562	blood:	n/a	n/a
10	JUND	chr11:76493957-76495942	A549	lung:	n/a	chr11:76494953-76494962 chr11:76495700-76495708 chr11:76495792-76495801 chr11:76495793-76495802 chr11:76495794-76495803 chr11:76495791-76495800
11	BHLHE40	chr11:76495430-76496251	K562	blood:	n/a	n/a
12	POLR2A	chr11:76494985-76495824	K562	blood:	n/a	n/a
13	HMGN3	chr11:76493994-76495857	K562	blood:	n/a	n/a
14	MAX	chr11:76493694-76496071	HCT-116	colon:	n/a	chr11:76495789-76495799 chr11:76494160-76494170 chr11:76494949-76494959 chr11:76494703-76494719
15	CREB1	chr11:76495427-76495856	A549	lung:	n/a	n/a
16	TAF1	chr11:76493945-76495702	HepG2	liver:	n/a	n/a
17	POLR2A	chr11:76493961-76495751	A549	lung:	n/a	n/a
18	CTCF	chr11:76495560-76495710	HRPEpiC	eye:	n/a	n/a
19	ZMIZ1	chr11:76495436-76496153	K562	blood:	n/a	n/a
20	CTCF	chr11:76495491-76495618	MCF-7	breast:	n/a	n/a
21	HCFC1	chr11:76495507-76495777	K562	blood:	n/a	n/a
22	CBX3	chr11:76495018-76496040	K562	blood:	n/a	n/a
23	MAX	chr11:76493901-76495857	ECC-1	luminal epithelium:	n/a	chr11:76495789-76495799 chr11:76494160-76494170 chr11:76494949-76494959 chr11:76494703-76494719
24	CTCF	chr11:76495440-76495590	HepG2	liver:	n/a	n/a
25	RAD21	chr11:76494721-76496172	IMR90	lung:	n/a	n/a
26	MYC	chr11:76493882-76495791	Hela-S3	cervix:	n/a	chr11:76494160-76494170 chr11:76494949-76494959 chr11:76494703-76494719
27	CTCF	chr11:76495551-76495759	K562	blood:	n/a	n/a
28	POLR2A	chr11:76493870-76495794	Hela-S3	cervix:	n/a	n/a
29	CTCF	chr11:76495516-76495582	MCF-7	breast:	n/a	n/a
30	KAP1	chr11:76495364-76495990	HEK293	kidney:	n/a	n/a
31	SP1	chr11:76493694-76496200	A549	lung:	n/a	chr11:76494942-76494954 chr11:76495795-76495804 chr11:76494161-76494173 chr11:76494943-76494957 chr11:76495410-76495424 chr11:76495070-76495084 chr11:76494107-76494119 chr11:76494942-76494954 chr11:76495069-76495081 chr11:76494951-76494965 chr11:76495373-76495382 chr11:76494561-76494570 chr11:76493913-76493925 chr11:76494943-76494953 chr11:76494559-76494571 chr11:76495372-76495381 chr11:76494559-76494571 chr11:76494161-76494173 chr11:76494561-76494570 chr11:76494943-76494953 chr11:76494560-76494570 chr11:76494107-76494119 chr11:76495374-76495387 chr11:76495071-76495080 chr11:76494560-76494569 chr11:76494108-76494117 chr11:76494104-76494118 chr11:76494560-76494570 chr11:76493915-76493924 chr11:76495371-76495383 chr11:76494943-76494952 chr11:76494162-76494171 chr11:76494464-76494473 chr11:76494944-76494953 chr11:76494110-76494124 chr11:76494566-76494575 chr11:76494115-76494124
32	CREB1	chr11:76493650-76495844	HepG2	liver:	n/a	n/a
33	MAX	chr11:76495408-76495923	SK-N-SH	brain:	n/a	chr11:76495789-76495799
34	POLR2A	chr11:76493301-76495756	Hela-S3	cervix:	n/a	n/a
35	NR3C1	chr11:76493914-76495724	A549	lung:	n/a	chr11:76494961-76494974 chr11:76495256-76495269
36	CTCF	chr11:76495520-76495670	AG04449	skin:	n/a	n/a
37	TCF7L2	chr11:76495529-76495863	Hela-S3	cervix:	n/a	chr11:76495719-76495733 chr11:76495719-76495733
38	POLR2A	chr11:76495107-76495767	MCF10A-Er-Src	breast:	n/a	n/a
39	MYC	chr11:76495521-76495849	MCF10A-Er-Src	breast:	n/a	chr11:76495789-76495799
40	POLR2A	chr11:76491728-76497876	HepG2	liver:	n/a	n/a
41	SIN3AK20	chr11:76495352-76495740	SK-N-SH	brain:	n/a	n/a
42	TAF1	chr11:76493296-76495927	A549	lung:	n/a	n/a
43	CTCF	chr11:76495500-76495650	NHEK	skin:	n/a	n/a
44	CTCF	chr11:76495506-76495868	IMR90	lung:	n/a	n/a
45	YY1	chr11:76495082-76495626	SK-N-SH_RA	brain:	n/a	chr11:76495161-76495172 chr11:76495448-76495462
46	POLR2A	chr11:76493898-76495921	K562	blood:	n/a	n/a
47	JUND	chr11:76495519-76495983	K562	blood:	n/a	chr11:76495700-76495708 chr11:76495792-76495801 chr11:76495793-76495802 chr11:76495794-76495803 chr11:76495791-76495800
48	HCFC1	chr11:76492743-76496293	Hela-S3	cervix:	n/a	n/a
49	YY1	chr11:76495305-76495921	K562	blood:	n/a	chr11:76495448-76495462
50	RFX5	chr11:76495515-76495771	Hela-S3	cervix:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:76495526-76495576	HAEpiC	amniotic membrane:	n/a
2	chr11:76495526-76495576	H1-hESC	embryonic stem cell:	embryo
3	chr11:76495526-76495576	IMR90	lung:	fetal
4	chr11:76495526-76495576	T-47D	breast:	n/a
5	chr11:76495526-76495576	K562	blood:	n/a
6	chr11:76495526-76495576	AG10803	skin:	n/a
7	chr11:76495526-76495576	HCF	heart:	n/a
8	chr11:76495526-76495576	NHBE	bronchial:	n/a
9	chr11:76495526-76495576	HCM	heart:	n/a
10	chr11:76495526-76495576	Jurkat	blood:	n/a
11	chr11:76495526-76495576	MCF10A-Er-Src	breast:	n/a
12	chr11:76495526-76495576	HUVEC	blood vessel:	n/a
13	chr11:76495526-76495576	SK-N-SH_RA	brain:	n/a
14	chr11:76495526-76495576	PANC-1	pancreas:	n/a
15	chr11:76495526-76495576	PrEC	prostate:	n/a
16	chr11:76495526-76495576	RPTEC	kidney:	n/a
17	chr11:76495526-76495576	SKMC	muscle:	n/a
18	chr11:76495526-76495576	AG04450	lung:	fetal
19	chr11:76495526-76495576	HCT-116	colon:	n/a
20	chr11:76495526-76495576	Hela-S3	cervix:	n/a
21	chr11:76495526-76495576	U87	brain:	n/a
22	chr11:76495526-76495576	HIPEpiC	eye:	n/a
23	chr11:76495526-76495576	Caco-2	colon:	n/a
24	chr11:76495526-76495576	AoSMC	blood vessel:	n/a
25	chr11:76495526-76495576	ECC-1	luminal epithelium:	n/a
26	chr11:76495526-76495576	MCF-7	breast:	n/a
27	chr11:76495526-76495576	NT2-D1	testis:	n/a
28	chr11:76495526-76495576	AG09319	gingival:	n/a
29	chr11:76495526-76495576	NHDF-neo	bronchial:	n/a
30	chr11:76495526-76495576	AG04449	skin:	fetal
31	chr11:76495526-76495576	BE2_C	brain:	n/a
32	chr11:76495526-76495576	NB4	blood:	n/a
33	chr11:76495526-76495576	A549	lung:	n/a
34	chr11:76495526-76495576	SK-N-SH	brain:	n/a
35	chr11:76495526-76495576	HRE	kidney:	n/a
36	chr11:76495526-76495576	HMEC	breast:	n/a
37	chr11:76495526-76495576	HL-60	blood:	n/a
38	chr11:76495526-76495576	GM12891	blood:	n/a
39	chr11:76495526-76495576	HRPEpiC	eye:	n/a
40	chr11:76495526-76495576	ovcar-3	ovarian:	n/a
41	chr11:76495526-76495576	HRCEpiC	kidney:	n/a
42	chr11:76495526-76495576	GM12878	blood:	n/a
43	chr11:76495526-76495576	BJ	skin:	n/a
44	chr11:76495526-76495576	AG09309	skin:	n/a
45	chr11:76495526-76495576	Hepatocyte	liver:	n/a
46	chr11:76495526-76495576	ProgFib	skin:	n/a
47	chr11:76495526-76495576	HEEpiC	esophagus:	n/a
48	chr11:76495526-76495576	GM12892	blood:	n/a
49	chr11:76495526-76495576	GM06990	blood:	n/a
50	chr11:76495526-76495576	LNCaP	prostate:	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:76495102..76495960-chr6:28303473..28304442,2	Hela-S3	cervix:
2	chr11:76493164..76499691-chr11:76510608..76517041,14	MCF-7	breast:
3	chr11:76494290..76496487-chr11:76570623..76573983,3	K562	blood:
4	chr11:76494634..76496487-chr11:76571954..76573983,2	K562	blood:
5	chr11:76494201..76496333-chr22:21271104..21273342,2	MCF-7	breast:
6	chr11:76493101..76495858-chr11:76570734..76573156,2	MCF-7	breast:
7	chr11:76492395..76495773-chr11:76745021..76748563,5	MCF-7	breast:
8	chr1:20834119..20834737-chr11:76494957..76495699,2	Hela-S3	cervix:
9	chr11:76495179..76497030-chr13:37572998..37574971,2	MCF-7	breast:
10	chr11:76492689..76500449-chr11:76507700..76515545,17	K562	blood:

Variant related genes	Relation type
ENSG00000255100	TF binding region
ENSG00000255100	CpG island
ENSG00000120699	Chromatin interaction
ENSG00000261578	Chromatin interaction
ENSG00000198488	Chromatin interaction
ENSG00000120697	Chromatin interaction
ENSG00000099942	Chromatin interaction
ENSG00000078124	Chromatin interaction
ENSG00000090432	Chromatin interaction
ENSG00000235109	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10160660	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10160769	0.98[EUR][1000 genomes]
rs10437754	0.98[EUR][1000 genomes]
rs10793194	1.00[CEU][hapmap];0.90[CHD][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10793195	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899278	0.97[EUR][1000 genomes]
rs10899279	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10899280	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899281	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899282	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899283	0.89[CHB][hapmap];0.95[CHD][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11236924	0.99[EUR][1000 genomes]
rs11236936	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12273016	0.80[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12282785	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12290350	0.94[CEU][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12788118	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1440977	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs1440978	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1440979	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1440980	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1465900	0.94[CEU][hapmap];0.90[CHD][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1837679	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1837680	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1866843	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4309181	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56228827	0.98[EUR][1000 genomes]
rs7107409	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs737185	0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7933092	0.96[EUR][1000 genomes]
rs7942337	0.97[EUR][1000 genomes]
rs7942368	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897931	chr11:76489673-76540708	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76492600-76495800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:76492600-76496400	Active TSS	Rectal Smooth Muscle	rectum
3	chr11:76493200-76495600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:76493200-76495800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:76493200-76496000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:76493200-76496000	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr11:76493200-76496000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:76493200-76496000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:76493200-76496000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:76493200-76496000	Active TSS	Stomach Mucosa	stomach
11	chr11:76493200-76496200	Active TSS	H9 Cell Line	embryonic stem cell
12	chr11:76493200-76496200	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr11:76493200-76496200	Active TSS	Fetal Kidney	kidney
14	chr11:76493200-76496400	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr11:76493400-76495600	Active TSS	HSMM	muscle
16	chr11:76493400-76495800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:76493400-76496000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:76493400-76496000	Active TSS	Psoas Muscle	Psoas
19	chr11:76493400-76496000	Active TSS	Sigmoid Colon	Sigmoid Colon
20	chr11:76493400-76496000	Active TSS	HSMMtube	muscle
21	chr11:76493600-76495600	Flanking Active TSS	Primary hematopoietic stem cells	blood
22	chr11:76493600-76495600	Active TSS	Cortex derived primary cultured neurospheres	brain
23	chr11:76493600-76495800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:76493600-76495800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:76493600-76495800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:76493600-76495800	Active TSS	iPS-18 Cell Line	embryonic stem cell
27	chr11:76493600-76495800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:76493600-76495800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:76493600-76495800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:76493600-76495800	Active TSS	Brain Angular Gyrus	brain
31	chr11:76493600-76495800	Active TSS	Colon Smooth Muscle	Colon
32	chr11:76493600-76495800	Active TSS	Duodenum Mucosa	Duodenum
33	chr11:76493600-76495800	Active TSS	Small Intestine	intestine
34	chr11:76493600-76495800	Active TSS	Hela-S3	cervix
35	chr11:76493600-76495800	Active TSS	HMEC	breast
36	chr11:76493600-76495800	Active TSS	NHEK	skin
37	chr11:76493600-76495800	Active TSS	Osteobl	bone
38	chr11:76493600-76496000	Active TSS	H1 Cell Line	embryonic stem cell
39	chr11:76493600-76496000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr11:76493600-76496000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:76493600-76496000	Active TSS	HUES6 Cell Line	embryonic stem cell
42	chr11:76493600-76496000	Active TSS	HUES64 Cell Line	embryonic stem cell
43	chr11:76493600-76496000	Active TSS	iPS-15b Cell Line	embryonic stem cell
44	chr11:76493600-76496000	Active TSS	Breast Myoepithelial Primary Cells	Breast
45	chr11:76493600-76496000	Active TSS	Aorta	Aorta
46	chr11:76493600-76496000	Active TSS	Brain Cingulate Gyrus	brain
47	chr11:76493600-76496000	Active TSS	Colonic Mucosa	Colon
48	chr11:76493600-76496000	Active TSS	Pancreatic Islets	Pancreatic Islet
49	chr11:76493600-76496000	Active TSS	NHDF-Ad	bronchial
50	chr11:76493600-76496200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links