Variant report

Variant	rs12282785
Chromosome Location	chr11:76476030-76476031
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76475812..76477877-chr11:76571809..76573437,2	MCF-7	breast:
2	chr11:76475834..76477640-chr11:76498585..76500944,2	K562	blood:
3	chr11:76457361..76460008-chr11:76475009..76477808,2	MCF-7	breast:
4	chr11:76475599..76479568-chr11:76492254..76495485,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LRRC32-5	chr11:76475920-76476281	XLOC_009508

Variant related genes	Relation type
ENSG00000255100	Chromatin interaction
ENSG00000078124	Chromatin interaction
ENSG00000182704	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10160660	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10160769	1.00[EUR][1000 genomes]
rs10437754	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793194	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793195	0.98[EUR][1000 genomes]
rs10899278	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899279	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899280	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10899281	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10899282	0.98[EUR][1000 genomes]
rs10899283	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11236923	0.88[ASN][1000 genomes]
rs11236924	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11236936	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12273016	0.86[EUR][1000 genomes]
rs12290350	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12788118	0.87[EUR][1000 genomes]
rs1440977	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1440978	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1440979	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1440980	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1465900	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1837679	0.93[EUR][1000 genomes]
rs1837680	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1866843	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3758711	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4309181	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56228827	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7107409	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs737185	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7933092	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7942337	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7942368	0.97[EUR][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76467800-76478400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr11:76470200-76479000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:76470600-76482000	Weak transcription	Psoas Muscle	Psoas
4	chr11:76472200-76477200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:76473000-76478600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:76473600-76483200	Enhancers	Esophagus	oesophagus
7	chr11:76473800-76479200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:76474000-76476200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:76474000-76476200	Enhancers	Lung	lung
10	chr11:76474000-76478800	Enhancers	Duodenum Mucosa	Duodenum
11	chr11:76474000-76481000	Enhancers	Fetal Muscle Trunk	muscle
12	chr11:76474000-76481200	Enhancers	Spleen	Spleen
13	chr11:76474000-76485600	Enhancers	Left Ventricle	heart
14	chr11:76474200-76476200	Enhancers	NH-A	brain
15	chr11:76474200-76476400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr11:76474200-76477400	Enhancers	Fetal Lung	lung
17	chr11:76474200-76478200	Enhancers	Right Ventricle	heart
18	chr11:76474400-76476600	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr11:76474400-76477000	Weak transcription	Liver	Liver
20	chr11:76474400-76485400	Enhancers	Fetal Muscle Leg	muscle
21	chr11:76475000-76477400	Enhancers	Fetal Brain Female	brain
22	chr11:76475000-76478800	Enhancers	Fetal Heart	heart
23	chr11:76475000-76480800	Enhancers	Fetal Brain Male	brain
24	chr11:76475200-76476200	Weak transcription	Gastric	stomach
25	chr11:76475200-76477000	Weak transcription	Fetal Kidney	kidney
26	chr11:76475200-76478200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr11:76475200-76479000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr11:76475200-76479000	Weak transcription	K562	blood
29	chr11:76475400-76476200	Enhancers	NHEK	skin
30	chr11:76475400-76476400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr11:76475400-76476400	Weak transcription	Fetal Intestine Small	intestine
32	chr11:76475400-76476600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr11:76475400-76476800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr11:76475400-76477000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:76475400-76477000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:76475400-76477200	Weak transcription	Colonic Mucosa	Colon
37	chr11:76475400-76477400	Weak transcription	HSMMtube	muscle
38	chr11:76475400-76478200	Weak transcription	Small Intestine	intestine
39	chr11:76475400-76478600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:76475400-76478600	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr11:76475400-76478600	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr11:76475400-76478600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr11:76475400-76478800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr11:76475400-76478800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr11:76475400-76478800	Weak transcription	Brain Angular Gyrus	brain
46	chr11:76475400-76479000	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr11:76475400-76479000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr11:76475400-76479200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:76475400-76479200	Weak transcription	NHDF-Ad	bronchial
50	chr11:76475400-76479400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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