Variant report

Variant	rs1440977
Chromosome Location	chr11:76476429-76476430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76155468..76156969-chr11:76476055..76478138,2	MCF-7	breast:
2	chr11:76475812..76477877-chr11:76571809..76573437,2	MCF-7	breast:
3	chr11:76448672..76451202-chr11:76476087..76478426,2	MCF-7	breast:
4	chr11:76475834..76477640-chr11:76498585..76500944,2	K562	blood:
5	chr11:76457361..76460008-chr11:76475009..76477808,2	MCF-7	breast:
6	chr11:76475599..76479568-chr11:76492254..76495485,3	K562	blood:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction
ENSG00000255135	Chromatin interaction
ENSG00000158636	Chromatin interaction
ENSG00000255100	Chromatin interaction
ENSG00000182704	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10160660	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10160769	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10437754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793194	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793195	0.98[EUR][1000 genomes]
rs10899278	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899279	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899280	0.99[EUR][1000 genomes]
rs10899281	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10899282	0.98[EUR][1000 genomes]
rs10899283	0.98[EUR][1000 genomes]
rs11236923	0.90[ASN][1000 genomes]
rs11236924	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236936	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12273016	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs12282785	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12290350	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12788118	0.87[EUR][1000 genomes]
rs1440978	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1440979	0.99[EUR][1000 genomes]
rs1440980	0.92[EUR][1000 genomes]
rs1465900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1837679	0.93[EUR][1000 genomes]
rs1837680	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1866843	0.99[EUR][1000 genomes]
rs3758711	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs4309181	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56228827	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7107409	0.99[EUR][1000 genomes]
rs737185	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7933092	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7942337	0.98[EUR][1000 genomes]
rs7942368	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76467800-76478400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr11:76470200-76479000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:76470600-76482000	Weak transcription	Psoas Muscle	Psoas
4	chr11:76472200-76477200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:76473000-76478600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:76473600-76483200	Enhancers	Esophagus	oesophagus
7	chr11:76473800-76479200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:76474000-76478800	Enhancers	Duodenum Mucosa	Duodenum
9	chr11:76474000-76481000	Enhancers	Fetal Muscle Trunk	muscle
10	chr11:76474000-76481200	Enhancers	Spleen	Spleen
11	chr11:76474000-76485600	Enhancers	Left Ventricle	heart
12	chr11:76474200-76477400	Enhancers	Fetal Lung	lung
13	chr11:76474200-76478200	Enhancers	Right Ventricle	heart
14	chr11:76474400-76476600	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr11:76474400-76477000	Weak transcription	Liver	Liver
16	chr11:76474400-76485400	Enhancers	Fetal Muscle Leg	muscle
17	chr11:76475000-76477400	Enhancers	Fetal Brain Female	brain
18	chr11:76475000-76478800	Enhancers	Fetal Heart	heart
19	chr11:76475000-76480800	Enhancers	Fetal Brain Male	brain
20	chr11:76475200-76477000	Weak transcription	Fetal Kidney	kidney
21	chr11:76475200-76478200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr11:76475200-76479000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:76475200-76479000	Weak transcription	K562	blood
24	chr11:76475400-76476600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr11:76475400-76476800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:76475400-76477000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:76475400-76477000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:76475400-76477200	Weak transcription	Colonic Mucosa	Colon
29	chr11:76475400-76477400	Weak transcription	HSMMtube	muscle
30	chr11:76475400-76478200	Weak transcription	Small Intestine	intestine
31	chr11:76475400-76478600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr11:76475400-76478600	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr11:76475400-76478600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr11:76475400-76478600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr11:76475400-76478800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr11:76475400-76478800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr11:76475400-76478800	Weak transcription	Brain Angular Gyrus	brain
38	chr11:76475400-76479000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr11:76475400-76479000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr11:76475400-76479200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:76475400-76479200	Weak transcription	NHDF-Ad	bronchial
42	chr11:76475400-76479400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:76475400-76481800	Weak transcription	Colon Smooth Muscle	Colon
44	chr11:76475600-76476800	Weak transcription	Adipose Nuclei	Adipose
45	chr11:76475600-76476800	Weak transcription	Ovary	ovary
46	chr11:76475600-76477400	Weak transcription	Stomach Mucosa	stomach
47	chr11:76475600-76478800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr11:76475600-76479800	Weak transcription	Brain Anterior Caudate	brain
49	chr11:76475800-76477000	Weak transcription	Placenta	Placenta
50	chr11:76475800-76477200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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