Variant report

Variant	rs10780582
Chromosome Location	chr9:85856584-85856585
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85835103..85836718-chr9:85854833..85857039,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10114830	0.84[ASN][1000 genomes]
rs10117817	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10122684	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10122802	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10735561	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10746698	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10746699	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10780578	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10780579	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10780580	0.81[EUR][1000 genomes]
rs1535747	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1535748	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2209191	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4390021	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4877741	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4877742	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4877744	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4877746	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4877750	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6559715	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7028221	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7030390	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7043458	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8181116	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85847200-85865400	Weak transcription	Ovary	ovary
2	chr9:85851400-85858800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:85851400-85862800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:85851600-85859400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:85854400-85857000	Weak transcription	Left Ventricle	heart
6	chr9:85854400-85862800	Weak transcription	Esophagus	oesophagus
7	chr9:85854400-85863000	Weak transcription	Pancreas	Pancrea
8	chr9:85854400-85865400	Weak transcription	Spleen	Spleen
9	chr9:85854400-85865600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:85854400-85865600	Weak transcription	Right Ventricle	heart
11	chr9:85854600-85857200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr9:85854600-85864600	Weak transcription	Fetal Kidney	kidney
13	chr9:85854600-85866000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr9:85854600-85866400	Weak transcription	Stomach Mucosa	stomach
15	chr9:85854800-85862600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr9:85854800-85867400	Weak transcription	HepG2	liver
17	chr9:85854800-85890400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr9:85855000-85857800	Weak transcription	Liver	Liver
19	chr9:85855000-85865800	Weak transcription	Fetal Stomach	stomach
20	chr9:85855000-85881400	Weak transcription	Adipose Nuclei	Adipose
21	chr9:85855200-85857800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:85855800-85857400	Weak transcription	Fetal Brain Female	brain
23	chr9:85856000-85857200	Weak transcription	Fetal Heart	heart
24	chr9:85856000-85861000	Weak transcription	Psoas Muscle	Psoas
25	chr9:85856000-85866800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr9:85856200-85857200	Enhancers	Fetal Lung	lung
27	chr9:85856200-85857800	Weak transcription	Fetal Muscle Leg	muscle
28	chr9:85856200-85910600	Weak transcription	Monocytes-CD14+_RO01746	blood

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