Variant report

Variant	rs4390021
Chromosome Location	chr9:85855254-85855255
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85835103..85836718-chr9:85854833..85857039,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10114830	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10117817	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122684	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122802	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10735561	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10746698	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10746699	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780578	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10780579	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10780580	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10780582	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1323767	0.81[ASN][1000 genomes]
rs1323768	0.81[ASN][1000 genomes]
rs1535747	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535748	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1830771	0.81[ASN][1000 genomes]
rs1924239	0.81[ASN][1000 genomes]
rs2209191	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877741	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877742	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877744	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877746	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877750	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6559715	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028221	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7030390	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7043458	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744959	0.81[ASN][1000 genomes]
rs748415	0.81[ASN][1000 genomes]
rs7848473	0.81[ASN][1000 genomes]
rs7851447	0.81[ASN][1000 genomes]
rs7851474	0.81[ASN][1000 genomes]
rs7855633	0.81[ASN][1000 genomes]
rs7866798	0.81[ASN][1000 genomes]
rs8181116	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85847200-85865400	Weak transcription	Ovary	ovary
2	chr9:85851400-85858800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:85851400-85862800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:85851600-85859400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:85853400-85856200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr9:85853800-85856000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:85854000-85855600	Enhancers	Psoas Muscle	Psoas
8	chr9:85854000-85856400	Enhancers	HUVEC	blood vessel
9	chr9:85854400-85857000	Weak transcription	Left Ventricle	heart
10	chr9:85854400-85862800	Weak transcription	Esophagus	oesophagus
11	chr9:85854400-85863000	Weak transcription	Pancreas	Pancrea
12	chr9:85854400-85865400	Weak transcription	Spleen	Spleen
13	chr9:85854400-85865600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:85854400-85865600	Weak transcription	Right Ventricle	heart
15	chr9:85854600-85855800	Weak transcription	Fetal Muscle Leg	muscle
16	chr9:85854600-85857200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr9:85854600-85864600	Weak transcription	Fetal Kidney	kidney
18	chr9:85854600-85866000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr9:85854600-85866400	Weak transcription	Stomach Mucosa	stomach
20	chr9:85854800-85855800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:85854800-85856200	Weak transcription	Fetal Lung	lung
22	chr9:85854800-85856200	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr9:85854800-85862600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr9:85854800-85867400	Weak transcription	HepG2	liver
25	chr9:85854800-85890400	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr9:85855000-85855800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr9:85855000-85856000	Enhancers	Fetal Heart	heart
28	chr9:85855000-85857800	Weak transcription	Liver	Liver
29	chr9:85855000-85865800	Weak transcription	Fetal Stomach	stomach
30	chr9:85855000-85881400	Weak transcription	Adipose Nuclei	Adipose
31	chr9:85855200-85857800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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