Variant report

Variant	rs7043458
Chromosome Location	chr9:85853917-85853918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10114830	0.81[CEU][hapmap];0.88[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.89[ASN][1000 genomes]
rs10117817	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122684	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122802	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10735561	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10746698	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10746699	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780577	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10780578	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10780579	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10780580	0.90[EUR][1000 genomes]
rs10780582	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1323767	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1323768	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1323771	1.00[GIH][hapmap]
rs1535747	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535748	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1830771	0.81[ASN][1000 genomes]
rs1924239	0.81[ASN][1000 genomes]
rs2209191	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4390021	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877741	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877742	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877744	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877746	0.88[ASW][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877750	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6559711	0.86[JPT][hapmap]
rs6559715	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028221	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7030390	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744959	0.81[ASN][1000 genomes]
rs748415	0.81[ASN][1000 genomes]
rs7848473	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7851233	1.00[JPT][hapmap]
rs7851447	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7851474	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7855633	0.81[ASN][1000 genomes]
rs7866798	0.81[ASN][1000 genomes]
rs7871379	1.00[JPT][hapmap]
rs8181116	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7043458	FRMD3	cis	brain	seeQTL

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85846400-85854000	Weak transcription	Pancreas	Pancrea
2	chr9:85846600-85854000	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:85846600-85854000	Weak transcription	Left Ventricle	heart
4	chr9:85846600-85854000	Weak transcription	Psoas Muscle	Psoas
5	chr9:85846600-85854000	Weak transcription	Right Atrium	heart
6	chr9:85846800-85854000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr9:85847200-85865400	Weak transcription	Ovary	ovary
8	chr9:85850000-85854000	Weak transcription	HUVEC	blood vessel
9	chr9:85851400-85858800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr9:85851400-85862800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:85851600-85859400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr9:85853400-85856200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr9:85853600-85854400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:85853600-85854600	Enhancers	Fetal Heart	heart
15	chr9:85853600-85855000	Enhancers	Adipose Nuclei	Adipose
16	chr9:85853800-85854800	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr9:85853800-85854800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr9:85853800-85855000	Enhancers	Hela-S3	cervix
19	chr9:85853800-85855000	Enhancers	NHDF-Ad	bronchial
20	chr9:85853800-85855200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:85853800-85856000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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