Variant report

Variant	rs4877750
Chromosome Location	chr9:85872664-85872665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10114830	0.88[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[ASN][1000 genomes]
rs10117817	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122684	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122802	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1048223	0.82[CEU][hapmap]
rs10735561	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10746698	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10746699	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780577	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10780578	0.97[ASN][1000 genomes]
rs10780579	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10780580	0.80[AMR][1000 genomes]
rs10780582	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1323767	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1323768	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1535747	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535748	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1830771	0.81[ASN][1000 genomes]
rs1924239	0.81[ASN][1000 genomes]
rs2209191	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4390021	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877741	0.95[CEU][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877742	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877744	0.94[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877746	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6559711	0.86[JPT][hapmap]
rs6559715	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028221	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7030390	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7043458	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744959	0.81[ASN][1000 genomes]
rs748415	0.81[ASN][1000 genomes]
rs7848473	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7851233	1.00[JPT][hapmap]
rs7851447	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7851474	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7855633	0.81[ASN][1000 genomes]
rs7866798	0.81[ASN][1000 genomes]
rs7871379	1.00[JPT][hapmap]
rs8181116	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv6586	chr9:85869828-85914812	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4877750	FRMD3	cis	brain	seeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85854800-85890400	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr9:85855000-85881400	Weak transcription	Adipose Nuclei	Adipose
3	chr9:85856200-85910600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr9:85861400-85873000	Weak transcription	Psoas Muscle	Psoas
5	chr9:85861400-85873000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr9:85863000-85873000	Weak transcription	Fetal Heart	heart
7	chr9:85863200-85873200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr9:85866000-85873000	Weak transcription	Left Ventricle	heart
9	chr9:85866200-85873600	Weak transcription	Right Ventricle	heart
10	chr9:85866200-85913000	Weak transcription	Aorta	Aorta
11	chr9:85872400-85875200	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links