Variant report

Variant	rs10780579
Chromosome Location	chr9:85849458-85849459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf103-3	chr9:85848627-85849794	NONHSAT132732

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10114830	0.81[CEU][hapmap];0.88[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.91[ASN][1000 genomes]
rs10117817	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10122684	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10122802	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1048223	0.82[YRI][hapmap]
rs10735561	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10746698	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10746699	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10780577	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10780578	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780580	0.91[EUR][1000 genomes]
rs10780582	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1323767	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1323768	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1323771	1.00[GIH][hapmap]
rs1535747	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1535748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1830771	0.83[ASN][1000 genomes]
rs1924239	0.83[ASN][1000 genomes]
rs2209191	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4390021	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4877741	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4877742	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4877744	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4877746	1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4877750	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6559711	0.86[JPT][hapmap]
rs6559715	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7028221	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7030390	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7043458	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs744959	0.83[ASN][1000 genomes]
rs748415	0.83[ASN][1000 genomes]
rs7848473	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7851233	1.00[JPT][hapmap]
rs7851447	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7851474	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7855633	0.83[ASN][1000 genomes]
rs7866798	0.83[ASN][1000 genomes]
rs7871379	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs8181116	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85844200-85850600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:85846400-85854000	Weak transcription	Pancreas	Pancrea
3	chr9:85846600-85854000	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:85846600-85854000	Weak transcription	Left Ventricle	heart
5	chr9:85846600-85854000	Weak transcription	Psoas Muscle	Psoas
6	chr9:85846600-85854000	Weak transcription	Right Atrium	heart
7	chr9:85846800-85854000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr9:85847200-85865400	Weak transcription	Ovary	ovary
9	chr9:85848400-85849800	Enhancers	Fetal Heart	heart
10	chr9:85848400-85853600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:85848800-85849600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr9:85848800-85850200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr9:85849000-85850600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr9:85849000-85850600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr9:85849200-85849600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr9:85849200-85850600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr9:85849200-85851600	Enhancers	HUES64 Cell Line	embryonic stem cell

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