Variant report

Variant	rs1535747
Chromosome Location	chr9:85864902-85864903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10114830	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10117817	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122684	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122802	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1048223	0.83[CEU][hapmap]
rs10735561	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10746698	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10746699	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780577	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10780578	0.97[ASN][1000 genomes]
rs10780579	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10780580	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10780582	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1323767	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1323768	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1535748	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1830771	0.81[ASN][1000 genomes]
rs1924239	0.81[ASN][1000 genomes]
rs2209191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4390021	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877741	1.00[CEU][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877744	1.00[CEU][hapmap];0.90[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877750	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6559711	0.86[JPT][hapmap]
rs6559715	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028221	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7030390	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7043458	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744959	0.81[ASN][1000 genomes]
rs748415	0.81[ASN][1000 genomes]
rs7848473	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7851233	1.00[JPT][hapmap]
rs7851447	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7851474	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7855633	0.81[ASN][1000 genomes]
rs7866798	0.81[ASN][1000 genomes]
rs7871379	1.00[JPT][hapmap]
rs8181116	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85847200-85865400	Weak transcription	Ovary	ovary
2	chr9:85854400-85865400	Weak transcription	Spleen	Spleen
3	chr9:85854400-85865600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:85854400-85865600	Weak transcription	Right Ventricle	heart
5	chr9:85854600-85866000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr9:85854600-85866400	Weak transcription	Stomach Mucosa	stomach
7	chr9:85854800-85867400	Weak transcription	HepG2	liver
8	chr9:85854800-85890400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr9:85855000-85865800	Weak transcription	Fetal Stomach	stomach
10	chr9:85855000-85881400	Weak transcription	Adipose Nuclei	Adipose
11	chr9:85856000-85866800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr9:85856200-85910600	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr9:85858600-85865600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:85858600-85866400	Weak transcription	Fetal Muscle Leg	muscle
15	chr9:85861200-85865800	Weak transcription	Aorta	Aorta
16	chr9:85861400-85873000	Weak transcription	Psoas Muscle	Psoas
17	chr9:85861400-85873000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr9:85861600-85868000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:85863000-85873000	Weak transcription	Fetal Heart	heart
20	chr9:85863200-85868000	Weak transcription	Pancreas	Pancrea
21	chr9:85863200-85873200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr9:85863400-85865600	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links