Variant report

Variant	rs1924239
Chromosome Location	chr9:85817607-85817608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10114830	0.91[ASN][1000 genomes]
rs10117817	0.81[ASN][1000 genomes]
rs10122684	0.81[ASN][1000 genomes]
rs10122802	0.81[ASN][1000 genomes]
rs10735561	0.81[ASN][1000 genomes]
rs10746698	0.81[ASN][1000 genomes]
rs10746699	0.81[ASN][1000 genomes]
rs10780577	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10780578	0.83[ASN][1000 genomes]
rs10780579	0.83[ASN][1000 genomes]
rs11139957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1323767	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1323768	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535747	0.81[ASN][1000 genomes]
rs1535748	0.83[ASN][1000 genomes]
rs1830771	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2209191	0.81[ASN][1000 genomes]
rs4390021	0.81[ASN][1000 genomes]
rs4877741	0.81[ASN][1000 genomes]
rs4877742	0.81[ASN][1000 genomes]
rs4877744	0.81[ASN][1000 genomes]
rs4877746	0.81[ASN][1000 genomes]
rs4877750	0.81[ASN][1000 genomes]
rs6559711	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6559715	0.81[ASN][1000 genomes]
rs7028221	0.81[ASN][1000 genomes]
rs7030390	0.81[ASN][1000 genomes]
rs7043458	0.81[ASN][1000 genomes]
rs744959	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs748415	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7848473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7851233	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7851447	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7851474	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7855633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7866798	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7871379	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8181116	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85817000-85822800	Weak transcription	HUVEC	blood vessel
2	chr9:85817600-85817800	Enhancers	Fetal Stomach	stomach

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