Variant report

Variant	rs7855633
Chromosome Location	chr9:85813542-85813543
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85722110..85725029-chr9:85812448..85815231,2	MCF-7	breast:
2	chr9:85800689..85803340-chr9:85812087..85815667,3	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10114830	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10117817	0.81[ASN][1000 genomes]
rs10122684	0.81[ASN][1000 genomes]
rs10122802	0.81[ASN][1000 genomes]
rs10735561	0.81[ASN][1000 genomes]
rs10746698	0.81[ASN][1000 genomes]
rs10746699	0.81[ASN][1000 genomes]
rs10780577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10780578	0.83[ASN][1000 genomes]
rs10780579	0.83[ASN][1000 genomes]
rs11139957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1323767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1323768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535747	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1535748	0.83[ASN][1000 genomes]
rs1830771	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1924239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2209191	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4390021	0.81[ASN][1000 genomes]
rs4877741	0.81[ASN][1000 genomes]
rs4877742	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4877744	0.81[ASN][1000 genomes]
rs4877746	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4877750	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6559711	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6559715	0.81[ASN][1000 genomes]
rs7028221	0.81[ASN][1000 genomes]
rs7030390	0.81[ASN][1000 genomes]
rs7043458	0.81[ASN][1000 genomes]
rs744959	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs748415	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7848473	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7851233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7851447	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7851474	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7866798	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7871379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8181116	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831642	chr9:85679425-85817338	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85811800-85813600	Enhancers	Fetal Heart	heart
2	chr9:85812200-85813600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr9:85812400-85813600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:85812600-85815000	Enhancers	Fetal Stomach	stomach
5	chr9:85813200-85813600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr9:85813200-85813600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr9:85813200-85813600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
8	chr9:85813200-85813800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr9:85813200-85813800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr9:85813400-85813600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr9:85813400-85813600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:85813400-85813600	Enhancers	Fetal Muscle Leg	muscle
13	chr9:85813400-85813800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:85813400-85813800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:85813400-85813800	Active TSS	Fetal Brain Female	brain
16	chr9:85813400-85814400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:85813400-85814600	Enhancers	Fetal Brain Male	brain

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