Variant report

Variant	rs7030390
Chromosome Location	chr9:85850877-85850878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85844452..85846497-chr9:85849504..85852357,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10114830	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10117817	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122684	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122802	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1048223	0.83[YRI][hapmap]
rs10735561	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10746698	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10746699	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780577	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10780578	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10780579	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10780580	0.89[EUR][1000 genomes]
rs10780582	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1323767	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1323768	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1535747	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535748	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1830771	0.81[ASN][1000 genomes]
rs1924239	0.81[ASN][1000 genomes]
rs2209191	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4390021	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877741	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877742	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877744	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877746	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877750	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6559711	0.86[JPT][hapmap]
rs6559715	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028221	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7043458	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744959	0.81[ASN][1000 genomes]
rs748415	0.81[ASN][1000 genomes]
rs7848473	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7851233	1.00[JPT][hapmap]
rs7851447	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7851474	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7855633	0.81[ASN][1000 genomes]
rs7866798	0.81[ASN][1000 genomes]
rs7871379	1.00[JPT][hapmap]
rs8181116	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85846400-85854000	Weak transcription	Pancreas	Pancrea
2	chr9:85846600-85854000	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:85846600-85854000	Weak transcription	Left Ventricle	heart
4	chr9:85846600-85854000	Weak transcription	Psoas Muscle	Psoas
5	chr9:85846600-85854000	Weak transcription	Right Atrium	heart
6	chr9:85846800-85854000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr9:85847200-85865400	Weak transcription	Ovary	ovary
8	chr9:85848400-85853600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:85849200-85851600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr9:85849800-85851000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:85849800-85853600	Weak transcription	Fetal Heart	heart
12	chr9:85850000-85854000	Weak transcription	HUVEC	blood vessel
13	chr9:85850200-85851400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr9:85850400-85851400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr9:85850400-85853800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:85850600-85851000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr9:85850600-85851200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr9:85850600-85851200	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr9:85850600-85851400	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr9:85850600-85851600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr9:85850800-85851000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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