Variant report

Variant	rs10780578
Chromosome Location	chr9:85847258-85847259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10114830	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10117817	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10122684	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10122802	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10735561	0.97[ASN][1000 genomes]
rs10746698	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10746699	0.97[ASN][1000 genomes]
rs10780577	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10780579	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780582	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12555313	0.82[JPT][hapmap]
rs1323767	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1323768	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1535747	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1535748	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1830771	0.83[ASN][1000 genomes]
rs1924239	0.83[ASN][1000 genomes]
rs2209191	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4390021	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4877741	0.97[ASN][1000 genomes]
rs4877742	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4877744	0.97[ASN][1000 genomes]
rs4877746	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4877750	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6559711	0.82[JPT][hapmap]
rs6559715	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7028221	0.97[ASN][1000 genomes]
rs7030390	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7043458	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs744959	0.83[ASN][1000 genomes]
rs748415	0.83[ASN][1000 genomes]
rs7848473	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7851233	1.00[JPT][hapmap]
rs7851447	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7851474	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7855633	0.83[ASN][1000 genomes]
rs7866798	0.83[ASN][1000 genomes]
rs7871379	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs8181116	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85844200-85850600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:85846400-85854000	Weak transcription	Pancreas	Pancrea
3	chr9:85846600-85854000	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:85846600-85854000	Weak transcription	Left Ventricle	heart
5	chr9:85846600-85854000	Weak transcription	Psoas Muscle	Psoas
6	chr9:85846600-85854000	Weak transcription	Right Atrium	heart
7	chr9:85846800-85848400	Weak transcription	Fetal Heart	heart
8	chr9:85846800-85854000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr9:85847200-85865400	Weak transcription	Ovary	ovary

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