Variant report

Variant	rs10746699
Chromosome Location	chr9:85856110-85856111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85835103..85836718-chr9:85854833..85857039,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10114830	0.88[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.89[ASN][1000 genomes]
rs10117817	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122684	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122802	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1048223	0.86[CEU][hapmap]
rs10735561	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10746698	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780577	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10780578	0.97[ASN][1000 genomes]
rs10780579	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10780580	0.82[EUR][1000 genomes]
rs10780582	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1323767	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1323768	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1535747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535748	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1830771	0.81[ASN][1000 genomes]
rs1924239	0.81[ASN][1000 genomes]
rs2209191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4390021	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877741	1.00[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877744	1.00[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877746	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877750	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6559711	0.86[JPT][hapmap]
rs6559715	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028221	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7030390	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7043458	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744959	0.81[ASN][1000 genomes]
rs748415	0.81[ASN][1000 genomes]
rs7848473	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7851233	1.00[JPT][hapmap]
rs7851447	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7851474	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7855633	0.81[ASN][1000 genomes]
rs7866798	0.81[ASN][1000 genomes]
rs7871379	1.00[JPT][hapmap]
rs8181116	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85847200-85865400	Weak transcription	Ovary	ovary
2	chr9:85851400-85858800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:85851400-85862800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:85851600-85859400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:85853400-85856200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr9:85854000-85856400	Enhancers	HUVEC	blood vessel
7	chr9:85854400-85857000	Weak transcription	Left Ventricle	heart
8	chr9:85854400-85862800	Weak transcription	Esophagus	oesophagus
9	chr9:85854400-85863000	Weak transcription	Pancreas	Pancrea
10	chr9:85854400-85865400	Weak transcription	Spleen	Spleen
11	chr9:85854400-85865600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:85854400-85865600	Weak transcription	Right Ventricle	heart
13	chr9:85854600-85857200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr9:85854600-85864600	Weak transcription	Fetal Kidney	kidney
15	chr9:85854600-85866000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr9:85854600-85866400	Weak transcription	Stomach Mucosa	stomach
17	chr9:85854800-85856200	Weak transcription	Fetal Lung	lung
18	chr9:85854800-85856200	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr9:85854800-85862600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr9:85854800-85867400	Weak transcription	HepG2	liver
21	chr9:85854800-85890400	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr9:85855000-85857800	Weak transcription	Liver	Liver
23	chr9:85855000-85865800	Weak transcription	Fetal Stomach	stomach
24	chr9:85855000-85881400	Weak transcription	Adipose Nuclei	Adipose
25	chr9:85855200-85857800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:85855800-85856200	ZNF genes & repeats	Fetal Muscle Leg	muscle
27	chr9:85855800-85857400	Weak transcription	Fetal Brain Female	brain
28	chr9:85856000-85857200	Weak transcription	Fetal Heart	heart
29	chr9:85856000-85861000	Weak transcription	Psoas Muscle	Psoas
30	chr9:85856000-85866800	Weak transcription	Fetal Muscle Trunk	muscle

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