Variant report

Variant	rs10735561
Chromosome Location	chr9:85856384-85856385
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85835103..85836718-chr9:85854833..85857039,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10114830	0.89[ASN][1000 genomes]
rs10117817	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122684	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122802	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10746698	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10746699	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780578	0.97[ASN][1000 genomes]
rs10780579	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10780580	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10780582	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1323767	0.81[ASN][1000 genomes]
rs1323768	0.81[ASN][1000 genomes]
rs1535747	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535748	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1830771	0.81[ASN][1000 genomes]
rs1924239	0.81[ASN][1000 genomes]
rs2209191	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4390021	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877741	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877742	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877744	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877746	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4877750	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6559715	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028221	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7030390	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7043458	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744959	0.81[ASN][1000 genomes]
rs748415	0.81[ASN][1000 genomes]
rs7848473	0.81[ASN][1000 genomes]
rs7851447	0.81[ASN][1000 genomes]
rs7851474	0.81[ASN][1000 genomes]
rs7855633	0.81[ASN][1000 genomes]
rs7866798	0.81[ASN][1000 genomes]
rs8181116	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85847200-85865400	Weak transcription	Ovary	ovary
2	chr9:85851400-85858800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:85851400-85862800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:85851600-85859400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:85854000-85856400	Enhancers	HUVEC	blood vessel
6	chr9:85854400-85857000	Weak transcription	Left Ventricle	heart
7	chr9:85854400-85862800	Weak transcription	Esophagus	oesophagus
8	chr9:85854400-85863000	Weak transcription	Pancreas	Pancrea
9	chr9:85854400-85865400	Weak transcription	Spleen	Spleen
10	chr9:85854400-85865600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:85854400-85865600	Weak transcription	Right Ventricle	heart
12	chr9:85854600-85857200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr9:85854600-85864600	Weak transcription	Fetal Kidney	kidney
14	chr9:85854600-85866000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr9:85854600-85866400	Weak transcription	Stomach Mucosa	stomach
16	chr9:85854800-85862600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr9:85854800-85867400	Weak transcription	HepG2	liver
18	chr9:85854800-85890400	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr9:85855000-85857800	Weak transcription	Liver	Liver
20	chr9:85855000-85865800	Weak transcription	Fetal Stomach	stomach
21	chr9:85855000-85881400	Weak transcription	Adipose Nuclei	Adipose
22	chr9:85855200-85857800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:85855800-85857400	Weak transcription	Fetal Brain Female	brain
24	chr9:85856000-85857200	Weak transcription	Fetal Heart	heart
25	chr9:85856000-85861000	Weak transcription	Psoas Muscle	Psoas
26	chr9:85856000-85866800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr9:85856200-85857200	Enhancers	Fetal Lung	lung
28	chr9:85856200-85857800	Weak transcription	Fetal Muscle Leg	muscle
29	chr9:85856200-85910600	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links