Variant report

Variant	rs10863129
Chromosome Location	chr12:86369952-86369953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10746359	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10779224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10779225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs10779227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10779236	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10863128	0.91[ASN][1000 genomes]
rs10863131	1.00[ASN][1000 genomes]
rs10863139	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap]
rs10863141	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs10863149	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10863164	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11117148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11117149	1.00[ASN][1000 genomes]
rs11117150	1.00[ASN][1000 genomes]
rs11117152	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11117154	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap]
rs11117171	0.82[YRI][hapmap]
rs11513955	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11611607	0.82[AMR][1000 genomes]
rs11614214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11615948	0.84[YRI][hapmap]
rs12298516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1354258	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1493407	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs1502803	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs1698754	0.80[CEU][hapmap]
rs1847206	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61929399	0.83[EUR][1000 genomes]
rs61929424	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61931064	1.00[ASN][1000 genomes]
rs61931120	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931121	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6539944	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6539947	0.82[EUR][1000 genomes]
rs7136221	1.00[CEU][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs721829	1.00[ASN][1000 genomes]
rs7294859	1.00[CHB][hapmap]
rs7295033	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7302043	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap]
rs7307686	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7398950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7485853	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7486591	0.95[CEU][hapmap]
rs7489114	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap]
rs7961367	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7965726	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7967417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7971447	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs839091	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs839135	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs9669353	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9706029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs9738989	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9804820	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1797806	chr12:86198935-86425608	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv559667	chr12:86318004-86416212	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3433117	chr12:86367321-86373219	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86369000-86371000	Enhancers	HUVEC	blood vessel

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