Variant report

Variant	rs10912499
Chromosome Location	chr1:172915392-172915393
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172909766..172912196-chr1:172914192..172916042,2	K562	blood:
2	chr1:172913673..172916975-chr1:172918949..172922757,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10489274	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10753064	0.83[ASN][1000 genomes]
rs10798242	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10798243	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10912497	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10912501	0.83[EUR][1000 genomes]
rs10912502	0.81[EUR][1000 genomes]
rs12035082	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12037203	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12037606	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12088638	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12097671	0.83[ASN][1000 genomes]
rs12402215	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12407389	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12409216	0.81[EUR][1000 genomes]
rs12410129	0.82[EUR][1000 genomes]
rs12565596	0.82[EUR][1000 genomes]
rs12739009	1.00[JPT][hapmap]
rs1894636	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2179425	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2206364	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2206365	0.83[EUR][1000 genomes]
rs2206366	0.82[EUR][1000 genomes]
rs2213746	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2227203	0.85[ASN][1000 genomes]
rs2422257	1.00[JPT][hapmap]
rs2422260	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4145469	0.91[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4916199	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4916285	1.00[JPT][hapmap]
rs4916286	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4916289	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4916290	0.83[EUR][1000 genomes]
rs6425189	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6674470	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6688532	0.91[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7517726	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7527986	1.00[JPT][hapmap]
rs7539319	1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7539951	0.83[EUR][1000 genomes]
rs926472	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs926473	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs926474	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9283384	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172905600-172916000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:172910800-172916200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:172911200-172915800	Weak transcription	NHDF-Ad	bronchial
4	chr1:172911200-172916000	Weak transcription	HSMMtube	muscle
5	chr1:172911200-172916200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:172911200-172917000	Weak transcription	Fetal Stomach	stomach
7	chr1:172911200-172917600	Weak transcription	Fetal Lung	lung
8	chr1:172911400-172916000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:172911400-172916000	Weak transcription	NH-A	brain
10	chr1:172913600-172919200	Enhancers	HUVEC	blood vessel
11	chr1:172914600-172917800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr1:172914800-172915400	Weak transcription	Dnd41	blood
13	chr1:172914800-172916000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:172915000-172917000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:172915000-172918000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr1:172915200-172924600	Weak transcription	Placenta Amnion	Placenta Amnion

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