The 2.0 version of rSNPBase

Variant report

Variant rs4145469
Chromosome Location chr1:172874991-172874992
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172865200-172875200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr1:172865800-172875200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr1:172865800-172878400 Weak transcription Placenta Amnion Placenta Amnion
4 chr1:172869600-172876800 Enhancers NHLF lung
5 chr1:172870000-172875000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
6 chr1:172870000-172875200 Weak transcription Primary T helper cells fromperipheralblood blood
7 chr1:172870200-172875200 Weak transcription Primary T killer naive cells fromperipheralblood blood
8 chr1:172870400-172875000 Weak transcription Primary T helper cells PMA-I stimulated --
9 chr1:172870400-172875200 Weak transcription Primary T helper naive cells fromperipheralblood blood
10 chr1:172870800-172875200 Weak transcription Primary B cells from cord blood blood
11 chr1:172870800-172875400 Weak transcription Primary hematopoietic stem cells blood
12 chr1:172870800-172875800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
13 chr1:172871000-172876600 Enhancers HSMM muscle
14 chr1:172871200-172876200 Enhancers HUVEC blood vessel
15 chr1:172871200-172877000 Enhancers NHDF-Ad bronchial
16 chr1:172871200-172877200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr1:172871400-172875200 Weak transcription Primary hematopoietic stem cells short term culture blood
18 chr1:172871400-172876400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
19 chr1:172871400-172876800 Enhancers Osteobl bone
20 chr1:172871400-172877000 Enhancers Muscle Satellite Cultured Cells --
21 chr1:172871600-172875200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr1:172871600-172877000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr1:172872200-172876400 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
24 chr1:172872200-172876600 Enhancers HSMMtube muscle
25 chr1:172872200-172876800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr1:172872200-172876800 Enhancers HMEC breast
27 chr1:172872400-172876600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
28 chr1:172872600-172877000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
29 chr1:172872800-172876800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
30 chr1:172873600-172876000 Enhancers NH-A brain
31 chr1:172873600-172876200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr1:172874000-172876400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr1:172874400-172875200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr1:172874400-172875200 Weak transcription Hela-S3 cervix
35 chr1:172874600-172875000 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
36 chr1:172874600-172876000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr1:172874600-172876800 Enhancers Primary T helper 17 cells PMA-I stimulated --
38 chr1:172874800-172875800 Weak transcription Thymus Thymus
39 chr1:172874800-172876000 Enhancers Primary T killer memory cells from peripheral blood blood
40 chr1:172874800-172876000 Weak transcription A549 lung
41 chr1:172874800-172876000 Enhancers Dnd41 blood
42 chr1:172874800-172876200 Enhancers Primary T cells from cord blood blood
43 chr1:172874800-172877000 Enhancers Primary B cells from peripheral blood blood
44 chr1:172874800-172877000 Enhancers NHEK skin

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Last update: Aug 31, 2015