The 2.0 version of rSNPBase

Variant report

Variant rs926473
Chromosome Location chr1:172901886-172901887
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172895800-172902200 Weak transcription Stomach Mucosa stomach
2 chr1:172897400-172903000 Weak transcription Esophagus oesophagus
3 chr1:172897600-172902200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr1:172897600-172903000 Weak transcription Stomach Smooth Muscle stomach
5 chr1:172897800-172903000 Weak transcription Fetal Stomach stomach
6 chr1:172898400-172903400 Weak transcription Rectal Smooth Muscle rectum
7 chr1:172898600-172902200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
8 chr1:172899200-172902000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
9 chr1:172899200-172902200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
10 chr1:172899200-172903200 Weak transcription NH-A brain
11 chr1:172899600-172903200 Weak transcription Colon Smooth Muscle Colon
12 chr1:172899600-172903200 Weak transcription HSMMtube muscle
13 chr1:172900400-172903000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
14 chr1:172900600-172906000 Enhancers HUVEC blood vessel
15 chr1:172900800-172902400 Enhancers Small Intestine intestine
16 chr1:172900800-172902800 Enhancers Placenta Amnion Placenta Amnion
17 chr1:172900800-172904200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
18 chr1:172900800-172904200 Enhancers Dnd41 blood
19 chr1:172900800-172904200 Enhancers NHLF lung
20 chr1:172900800-172904800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
21 chr1:172900800-172905000 Enhancers Muscle Satellite Cultured Cells --
22 chr1:172901200-172903800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr1:172901400-172902200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
24 chr1:172901400-172903200 Enhancers NHDF-Ad bronchial
25 chr1:172901400-172904000 Enhancers HepG2 liver
26 chr1:172901400-172904200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr1:172901600-172902200 Weak transcription HSMM muscle
28 chr1:172901600-172902400 Enhancers Sigmoid Colon Sigmoid Colon
29 chr1:172901600-172902400 Flanking Active TSS A549 lung
30 chr1:172901600-172902600 Enhancers Breast Myoepithelial Primary Cells Breast
31 chr1:172901600-172903000 Enhancers Hela-S3 cervix
32 chr1:172901600-172903200 Enhancers K562 blood
33 chr1:172901600-172905200 Weak transcription Spleen Spleen
34 chr1:172901800-172902000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
35 chr1:172901800-172902000 Enhancers Pancreatic Islets Pancreatic Islet
36 chr1:172901800-172902400 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr1:172901800-172903800 Enhancers Placenta Placenta
38 chr1:172901800-172904000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
39 chr1:172901800-172904200 Enhancers Osteobl bone
40 chr1:172901800-172904400 Enhancers NHEK skin
41 chr1:172901800-172904600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
42 chr1:172901800-172904600 Enhancers HMEC breast

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Last update: Aug 31, 2015