The 2.0 version of rSNPBase

Variant report

Variant rs926474
Chromosome Location chr1:172901724-172901725
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172895800-172902200 Weak transcription Stomach Mucosa stomach
2 chr1:172897400-172903000 Weak transcription Esophagus oesophagus
3 chr1:172897600-172902200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr1:172897600-172903000 Weak transcription Stomach Smooth Muscle stomach
5 chr1:172897800-172903000 Weak transcription Fetal Stomach stomach
6 chr1:172898200-172901800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
7 chr1:172898400-172903400 Weak transcription Rectal Smooth Muscle rectum
8 chr1:172898600-172902200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
9 chr1:172899000-172901800 Weak transcription Placenta Placenta
10 chr1:172899200-172902000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
11 chr1:172899200-172902200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr1:172899200-172903200 Weak transcription NH-A brain
13 chr1:172899600-172901800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr1:172899600-172901800 Weak transcription HMEC breast
15 chr1:172899600-172901800 Weak transcription Osteobl bone
16 chr1:172899600-172903200 Weak transcription Colon Smooth Muscle Colon
17 chr1:172899600-172903200 Weak transcription HSMMtube muscle
18 chr1:172899800-172901800 Weak transcription NHEK skin
19 chr1:172900400-172903000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
20 chr1:172900600-172906000 Enhancers HUVEC blood vessel
21 chr1:172900800-172902400 Enhancers Small Intestine intestine
22 chr1:172900800-172902800 Enhancers Placenta Amnion Placenta Amnion
23 chr1:172900800-172904200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
24 chr1:172900800-172904200 Enhancers Dnd41 blood
25 chr1:172900800-172904200 Enhancers NHLF lung
26 chr1:172900800-172904800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
27 chr1:172900800-172905000 Enhancers Muscle Satellite Cultured Cells --
28 chr1:172901200-172903800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr1:172901400-172901800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
30 chr1:172901400-172902200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
31 chr1:172901400-172903200 Enhancers NHDF-Ad bronchial
32 chr1:172901400-172904000 Enhancers HepG2 liver
33 chr1:172901400-172904200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:172901600-172901800 Enhancers Adipose Nuclei Adipose
35 chr1:172901600-172901800 Enhancers Left Ventricle heart
36 chr1:172901600-172902200 Weak transcription HSMM muscle
37 chr1:172901600-172902400 Enhancers Sigmoid Colon Sigmoid Colon
38 chr1:172901600-172902400 Flanking Active TSS A549 lung
39 chr1:172901600-172902600 Enhancers Breast Myoepithelial Primary Cells Breast
40 chr1:172901600-172903000 Enhancers Hela-S3 cervix
41 chr1:172901600-172903200 Enhancers K562 blood
42 chr1:172901600-172905200 Weak transcription Spleen Spleen

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Last update: Aug 31, 2015