Variant report

Variant	rs12402215
Chromosome Location	chr1:172911160-172911161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172908894..172911352-chr1:172913551..172915186,2	MCF-7	breast:
2	chr1:172909766..172912196-chr1:172914192..172916042,2	K562	blood:
3	chr1:172909514..172913371-chr1:172916147..172919223,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10489274	0.82[EUR][1000 genomes]
rs10798243	0.82[EUR][1000 genomes]
rs10798244	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10912491	0.85[ASN][1000 genomes]
rs10912499	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10912501	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10912502	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12025176	0.85[ASN][1000 genomes]
rs12037203	0.80[EUR][1000 genomes]
rs12409216	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12410129	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12565596	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12567579	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12728265	0.83[ASN][1000 genomes]
rs12748081	0.85[ASN][1000 genomes]
rs1883475	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2051629	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2179425	0.82[EUR][1000 genomes]
rs2187893	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2206363	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2206364	0.81[EUR][1000 genomes]
rs2206365	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2206366	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35715673	0.85[ASN][1000 genomes]
rs4145468	0.85[ASN][1000 genomes]
rs4916287	0.86[EUR][1000 genomes]
rs4916288	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4916289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916290	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6668693	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6674470	0.83[EUR][1000 genomes]
rs7517726	0.83[EUR][1000 genomes]
rs7539951	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs926472	0.82[EUR][1000 genomes]
rs926473	0.80[EUR][1000 genomes]
rs926474	0.80[EUR][1000 genomes]
rs9283384	0.83[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172903600-172914200	Weak transcription	Aorta	Aorta
2	chr1:172905600-172916000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:172907200-172911200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:172907400-172911200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:172907400-172911200	Enhancers	NHDF-Ad	bronchial
6	chr1:172907600-172911400	Enhancers	NHLF	lung
7	chr1:172908400-172911200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:172908400-172911200	Enhancers	Fetal Stomach	stomach
9	chr1:172909200-172911400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr1:172909200-172911400	Enhancers	Colon Smooth Muscle	Colon
11	chr1:172909200-172911400	Enhancers	NH-A	brain
12	chr1:172909400-172911200	Enhancers	HSMMtube	muscle
13	chr1:172909600-172911200	Enhancers	Fetal Lung	lung
14	chr1:172909800-172911200	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr1:172910000-172911400	Enhancers	Stomach Smooth Muscle	stomach
16	chr1:172910400-172911200	Enhancers	Rectal Smooth Muscle	rectum
17	chr1:172910400-172911400	Enhancers	Fetal Brain Female	brain
18	chr1:172910800-172911200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:172910800-172914200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr1:172910800-172916200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:172911000-172911400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:172911000-172911400	Enhancers	Brain Germinal Matrix	brain
23	chr1:172911000-172914400	Weak transcription	Placenta Amnion	Placenta Amnion

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