The 2.0 version of rSNPBase

Variant report

Variant rs12565596
Chromosome Location chr1:172903845-172903846
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172900600-172906000 Enhancers HUVEC blood vessel
2 chr1:172900800-172904200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
3 chr1:172900800-172904200 Enhancers Dnd41 blood
4 chr1:172900800-172904200 Enhancers NHLF lung
5 chr1:172900800-172904800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
6 chr1:172900800-172905000 Enhancers Muscle Satellite Cultured Cells --
7 chr1:172901400-172904000 Enhancers HepG2 liver
8 chr1:172901400-172904200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr1:172901600-172905200 Weak transcription Spleen Spleen
10 chr1:172901800-172904000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
11 chr1:172901800-172904200 Enhancers Osteobl bone
12 chr1:172901800-172904400 Enhancers NHEK skin
13 chr1:172901800-172904600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr1:172901800-172904600 Enhancers HMEC breast
15 chr1:172902000-172904000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
16 chr1:172902200-172904200 Enhancers Primary hematopoietic stem cells short term culture blood
17 chr1:172902200-172904800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr1:172902400-172904200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
19 chr1:172902600-172908800 Weak transcription Breast Myoepithelial Primary Cells Breast
20 chr1:172902800-172904200 Enhancers Primary monocytes fromperipheralblood blood
21 chr1:172902800-172908800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr1:172903000-172904000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
23 chr1:172903000-172904000 Enhancers Fetal Adrenal Gland Adrenal Gland
24 chr1:172903000-172904600 Enhancers Monocytes-CD14+_RO01746 blood
25 chr1:172903200-172904000 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
26 chr1:172903200-172904000 Enhancers Colon Smooth Muscle Colon
27 chr1:172903200-172904000 Enhancers HSMMtube muscle
28 chr1:172903200-172904200 Enhancers Duodenum Smooth Muscle Duodenum
29 chr1:172903200-172904200 Enhancers Placenta Amnion Placenta Amnion
30 chr1:172903200-172904200 Flanking Active TSS A549 lung
31 chr1:172903200-172904200 Enhancers HSMM muscle
32 chr1:172903200-172904200 Enhancers NH-A brain
33 chr1:172903400-172904000 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
34 chr1:172903400-172904000 Enhancers Rectal Mucosa Donor 31 rectum
35 chr1:172903400-172904000 Enhancers Rectal Smooth Muscle rectum
36 chr1:172903400-172904200 Enhancers K562 blood
37 chr1:172903600-172904000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr1:172903600-172904200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
39 chr1:172903600-172904200 Enhancers Pancreatic Islets Pancreatic Islet
40 chr1:172903600-172904400 Enhancers Hela-S3 cervix
41 chr1:172903600-172904600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
42 chr1:172903600-172904600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
43 chr1:172903600-172914200 Weak transcription Aorta Aorta
44 chr1:172903800-172904800 Enhancers NHDF-Ad bronchial
45 chr1:172903800-172905000 Weak transcription Left Ventricle heart
46 chr1:172903800-172908400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr1:172903800-172908400 Weak transcription Fetal Stomach stomach
48 chr1:172903800-172908600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

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Last update: Aug 31, 2015