Variant report

Variant rs11084197
Chromosome Location chr19:53357911-53357912
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:53339000-53359200 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
2 chr19:53343200-53359200 ZNF genes & repeats Primary monocytes fromperipheralblood blood
3 chr19:53344000-53358000 ZNF genes & repeats Lung lung
4 chr19:53345400-53360200 Weak transcription Fetal Heart heart
5 chr19:53345400-53360200 Weak transcription Hela-S3 cervix
6 chr19:53345800-53360400 Weak transcription ES-WA7 Cell Line embryonic stem cell
7 chr19:53346400-53360400 Weak transcription Fetal Brain Male brain
8 chr19:53347600-53360000 Weak transcription HMEC breast
9 chr19:53348000-53359200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
10 chr19:53348000-53359200 Strong transcription HUES6 Cell Line embryonic stem cell
11 chr19:53348000-53360200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
12 chr19:53348200-53358200 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr19:53348600-53358800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr19:53348600-53360200 Weak transcription Stomach Mucosa stomach
15 chr19:53349200-53360200 Weak transcription Pancreatic Islets Pancreatic Islet
16 chr19:53349800-53360000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
17 chr19:53349800-53360000 Weak transcription iPS-15b Cell Line embryonic stem cell
18 chr19:53350200-53359200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
19 chr19:53350800-53358000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
20 chr19:53351200-53358400 Strong transcription Dnd41 blood
21 chr19:53351600-53358000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
22 chr19:53351600-53360200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr19:53352000-53359200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
24 chr19:53352000-53360200 Weak transcription Brain Substantia Nigra brain
25 chr19:53352200-53360000 Weak transcription ES-I3 Cell Line embryonic stem cell
26 chr19:53352400-53360000 Weak transcription HUVEC blood vessel
27 chr19:53352600-53360000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
28 chr19:53352800-53360000 Weak transcription NHDF-Ad bronchial
29 chr19:53353000-53360000 Weak transcription Brain Cingulate Gyrus brain
30 chr19:53353600-53360200 Weak transcription Colon Smooth Muscle Colon
31 chr19:53353800-53360000 Weak transcription Brain Germinal Matrix brain
32 chr19:53353800-53360000 Weak transcription Fetal Lung lung
33 chr19:53354800-53360000 Weak transcription Brain Hippocampus Middle brain
34 chr19:53355000-53358000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
35 chr19:53355000-53358000 Strong transcription Fetal Intestine Large intestine
36 chr19:53355000-53358600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr19:53355000-53358600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
38 chr19:53355000-53358800 Strong transcription Primary T helper 17 cells PMA-I stimulated --
39 chr19:53355000-53360000 Weak transcription Left Ventricle heart
40 chr19:53355000-53360200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
41 chr19:53355400-53360000 Weak transcription NH-A brain
42 chr19:53356200-53358200 Strong transcription Fetal Thymus thymus
43 chr19:53356400-53358000 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin01 Skin
44 chr19:53356400-53358000 Genic enhancers Placenta Placenta
45 chr19:53356400-53358000 ZNF genes & repeats GM12878-XiMat blood
46 chr19:53356600-53358600 Strong transcription Fetal Brain Female brain
47 chr19:53356600-53360200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
48 chr19:53356600-53360200 Weak transcription HSMM muscle
49 chr19:53356800-53358600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr19:53356800-53360000 Weak transcription Psoas Muscle Psoas

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