Variant report

Variant	rs55759769
Chromosome Location	chr19:53360992-53360993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:53360098-53361177	GM12878	blood:	n/a	n/a
2	POLR2A	chr19:53360676-53360996	A549	lung:	n/a	n/a
3	POLR2A	chr19:53360602-53361037	K562	blood:	n/a	n/a
4	MYC	chr19:53360688-53361033	MCF-7	breast:	n/a	chr19:53360950-53360960 chr19:53360996-53361006
5	TAF1	chr19:53360677-53361031	Hela-S3	cervix:	n/a	n/a
6	STAT1	chr19:53360657-53361199	GM12878	blood:	n/a	n/a
7	NR2F2	chr19:53360930-53361304	MCF-7	breast:	n/a	n/a
8	CTCF	chr19:53360980-53361130	HCT-116	colon:	n/a	chr19:53360990-53361003
9	POLR2A	chr19:53360616-53361045	Hela-S3	cervix:	n/a	n/a
10	HEY1	chr19:53360569-53361077	K562	blood:	n/a	n/a
11	POLR2A	chr19:53360656-53361034	HepG2	liver:	n/a	n/a
12	CTCF	chr19:53360927-53361017	Hela-S3	cervix:	n/a	chr19:53360990-53361003
13	NRF1	chr19:53360700-53361064	GM12878	blood:	n/a	chr19:53360950-53360959
14	EBF1	chr19:53360826-53361036	GM12878	blood:	n/a	n/a
15	POLR2A	chr19:53360644-53361044	GM12892	blood:	n/a	n/a
16	CBX3	chr19:53360595-53361343	K562	blood:	n/a	n/a
17	EGR1	chr19:53360702-53361017	K562	blood:	n/a	chr19:53360860-53360869 chr19:53360945-53360958 chr19:53360950-53360960
18	RAD21	chr19:53360867-53361074	Hela-S3	cervix:	n/a	chr19:53360993-53361005
19	POLR2A	chr19:53360684-53361010	H1-hESC	embryonic stem cell:	n/a	n/a
20	CTCF	chr19:53360940-53361025	GM12892	blood:	n/a	chr19:53360990-53361003
21	POLR2A	chr19:53360184-53361070	GM12892	blood:	n/a	n/a
22	POLR2A	chr19:53360542-53361218	PBDE	blood:	n/a	n/a
23	POLR2A	chr19:53360332-53361198	MCF-7	breast:	n/a	n/a
24	CTCF	chr19:53360860-53361010	AG04449	skin:	n/a	chr19:53360990-53361003
25	ZNF143	chr19:53360655-53361220	GM12878	blood:	n/a	n/a
26	CHD2	chr19:53360829-53361263	GM12878	blood:	n/a	n/a
27	ELF1	chr19:53360930-53361206	HCT-116	colon:	n/a	chr19:53360993-53361005
28	RCOR1	chr19:53360537-53361619	IMR90	lung:	n/a	n/a
29	POLR2A	chr19:53360310-53361018	IMR90	lung:	n/a	n/a
30	POLR2A	chr19:53359740-53361043	GM12891	blood:	n/a	n/a
31	SPI1	chr19:53360671-53361016	GM12891	blood:	n/a	n/a
32	TAF1	chr19:53360665-53361019	H1-hESC	embryonic stem cell:	n/a	n/a
33	MAZ	chr19:53360854-53361064	Hela-S3	cervix:	n/a	chr19:53360950-53360960 chr19:53360996-53361006
34	CTCF	chr19:53360987-53361008	GM19239	blood:	n/a	chr19:53360990-53361003
35	CTCF	chr19:53360919-53361045	GM19240	blood:	n/a	chr19:53360990-53361003
36	CTCF	chr19:53360901-53361081	K562	blood:	n/a	chr19:53360990-53361003
37	SIN3AK20	chr19:53360566-53361032	HepG2	liver:	n/a	n/a
38	SIN3A	chr19:53360847-53361276	H1-hESC	embryonic stem cell:	n/a	n/a
39	MXI1	chr19:53360670-53361049	HepG2	liver:	n/a	n/a
40	RUNX3	chr19:53360665-53361150	GM12878	blood:	n/a	n/a
41	POLR2A	chr19:53360556-53361048	MCF10A-Er-Src	breast:	n/a	n/a
42	TAF1	chr19:53360586-53360996	GM12891	blood:	n/a	n/a
43	EBF1	chr19:53360745-53361137	GM12878	blood:	n/a	n/a
44	CTCF	chr19:53360843-53361069	GM12878	blood:	n/a	chr19:53360990-53361003
45	POLR2A	chr19:53360619-53361083	HepG2	liver:	n/a	n/a
46	ELF1	chr19:53360478-53361253	GM12878	blood:	n/a	chr19:53360860-53360871 chr19:53360993-53361005 chr19:53360825-53360837
47	MXI1	chr19:53360652-53361193	GM12878	blood:	n/a	n/a
48	TAF1	chr19:53360637-53361011	GM12891	blood:	n/a	n/a
49	HA-E2F1	chr19:53360565-53361278	MCF-7	breast:	n/a	chr19:53361058-53361065
50	HMGN3	chr19:53360863-53361040	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr19:53322321..53326212-chr19:53359321..53361245,3	K562	blood:
2	chr19:53322321..53326212-chr19:53359240..53361245,4	K562	blood:
3	chr19:53359757..53362433-chr19:53464752..53467349,2	MCF-7	breast:
4	chr19:53193532..53195862-chr19:53359115..53361191,3	K562	blood:
5	chr19:53359564..53361265-chr19:53424872..53426783,2	MCF-7	breast:

Variant related genes	Relation type
ZNF468	TF binding region
ZNF28	TF binding region
ENSG00000213793	Chromatin interaction
ENSG00000167766	Chromatin interaction
ENSG00000269646	Chromatin interaction
ENSG00000198538	Chromatin interaction
ENSG00000221874	Chromatin interaction
ENSG00000180257	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11084197	0.90[ASN][1000 genomes]
rs11667754	0.90[ASN][1000 genomes]
rs35231921	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35901334	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7249537	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:77 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057296	chr19:52950339-53396986	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv912306	chr19:53092465-53400760	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv912307	chr19:53092465-53433054	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv912308	chr19:53092465-53436337	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv912309	chr19:53092465-53440653	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv912310	chr19:53092465-53451291	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv912313	chr19:53103875-53436337	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv912317	chr19:53105547-53440653	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	nsv1066762	chr19:53112568-53552217	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
10	nsv912318	chr19:53118278-53451291	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
11	esv3489404	chr19:53121944-53391394	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
12	esv3489405	chr19:53121944-53391394	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
13	nsv432072	chr19:53144788-53554388	Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
14	esv3401212	chr19:53151131-53482063	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	nsv912321	chr19:53186836-53451291	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
16	nsv1058903	chr19:53193570-53489633	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
17	nsv1067280	chr19:53193570-53567287	Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
18	nsv544062	chr19:53193570-53567287	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
19	nsv580030	chr19:53194344-53547394	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
20	nsv1057118	chr19:53195426-53480449	Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
21	nsv530807	chr19:53210488-53695881	Strong transcription Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
22	nsv833875	chr19:53211335-53391459	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
23	nsv961240	chr19:53242965-53395960	Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
24	nsv912323	chr19:53249347-53451291	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
25	nsv1066277	chr19:53261575-53364138	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
26	nsv1061781	chr19:53263785-53364138	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
27	nsv1061149	chr19:53266861-53364138	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
28	esv3431689	chr19:53291230-53483998	Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
29	nsv870040	chr19:53291253-53375097	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
30	nsv580033	chr19:53297766-53374032	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
31	nsv458747	chr19:53302481-53424324	ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
32	nsv580034	chr19:53302481-53424324	Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
33	nsv912325	chr19:53302622-53367392	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
34	nsv528436	chr19:53302622-53374032	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
35	nsv912326	chr19:53311563-53374032	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
36	nsv1060400	chr19:53316328-53362705	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
37	nsv912328	chr19:53317001-53374032	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
38	nsv912329	chr19:53317001-53440653	Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
39	nsv912330	chr19:53317001-53478109	Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
40	nsv912334	chr19:53317230-53367392	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
41	nsv1059988	chr19:53319092-53362705	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
42	nsv1055707	chr19:53319092-53364138	Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
43	nsv1056382	chr19:53319092-53369711	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
44	nsv1058468	chr19:53319092-53370013	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
45	nsv1060163	chr19:53319092-53386857	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
46	esv2760523	chr19:53319104-53364138	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
47	esv20968	chr19:53322989-53361358	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
48	nsv819146	chr19:53325029-53363008	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
49	nsv1062275	chr19:53327378-53362705	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
50	nsv1060712	chr19:53327378-53364138	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:53358800-53361200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr19:53359600-53361000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr19:53359800-53361000	Active TSS	Colonic Mucosa	Colon
4	chr19:53359800-53361200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr19:53359800-53361200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr19:53360000-53361000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr19:53360000-53361000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr19:53360000-53361000	Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr19:53360000-53361000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr19:53360000-53361000	Active TSS	Primary T cells from cord blood	blood
11	chr19:53360000-53361000	Active TSS	Primary T cells fromperipheralblood	blood
12	chr19:53360000-53361000	Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr19:53360000-53361000	Active TSS	Primary T helper cells fromperipheralblood	blood
14	chr19:53360000-53361000	Active TSS	Cortex derived primary cultured neurospheres	brain
15	chr19:53360000-53361000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr19:53360000-53361000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr19:53360000-53361000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr19:53360000-53361000	Active TSS	Fetal Muscle Leg	muscle
19	chr19:53360000-53361000	Active TSS	Placenta	Placenta
20	chr19:53360000-53361000	Active TSS	HepG2	liver
21	chr19:53360000-53361000	Active TSS	HUVEC	blood vessel
22	chr19:53360000-53361000	Active TSS	K562	blood
23	chr19:53360000-53361000	Active TSS	Monocytes-CD14+_RO01746	blood
24	chr19:53360000-53361200	Active TSS	H1 Cell Line	embryonic stem cell
25	chr19:53360000-53361200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr19:53360000-53361200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr19:53360000-53361200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr19:53360000-53361200	Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr19:53360000-53361200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr19:53360000-53361200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
31	chr19:53360000-53361200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr19:53360000-53361200	Active TSS	Muscle Satellite Cultured Cells	--
33	chr19:53360000-53361200	Active TSS	Duodenum Mucosa	Duodenum
34	chr19:53360000-53361200	Active TSS	Fetal Brain Female	brain
35	chr19:53360000-53361200	Active TSS	Fetal Lung	lung
36	chr19:53360000-53361200	Active TSS	Fetal Stomach	stomach
37	chr19:53360000-53361200	Active TSS	Left Ventricle	heart
38	chr19:53360000-53361200	Active TSS	Lung	lung
39	chr19:53360000-53361200	Active TSS	Rectal Mucosa Donor 29	rectum
40	chr19:53360000-53361200	Active TSS	HMEC	breast
41	chr19:53360000-53361200	Active TSS	NHDF-Ad	bronchial
42	chr19:53360000-53361400	Active TSS	ES-I3 Cell Line	embryonic stem cell
43	chr19:53360000-53361400	Active TSS	H9 Cell Line	embryonic stem cell
44	chr19:53360000-53361400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr19:53360000-53361400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr19:53360000-53361400	Active TSS	HUES64 Cell Line	embryonic stem cell
47	chr19:53360000-53361400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr19:53360000-53361400	Active TSS	Brain Angular Gyrus	brain
49	chr19:53360000-53361400	Active TSS	Rectal Smooth Muscle	rectum
50	chr19:53360000-53361400	Active TSS	GM12878-XiMat	blood

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