Variant report

Variant rs11879776
Chromosome Location chr19:23556187-23556188
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23513200-23570400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
2 chr19:23524400-23570200 ZNF genes & repeats Liver Liver
3 chr19:23524600-23570000 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
4 chr19:23529400-23556800 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
5 chr19:23544000-23576400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
6 chr19:23544600-23560600 ZNF genes & repeats IMR90 fetal lung fibroblasts Cell Line lung
7 chr19:23544800-23557000 ZNF genes & repeats Primary T regulatory cells fromperipheralblood blood
8 chr19:23544800-23558000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
9 chr19:23548800-23556600 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr19:23549000-23556800 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
11 chr19:23549000-23557200 ZNF genes & repeats Pancreatic Islets Pancreatic Islet
12 chr19:23549000-23560400 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
13 chr19:23549200-23556200 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
14 chr19:23549200-23557200 ZNF genes & repeats Primary neutrophils fromperipheralblood blood
15 chr19:23549200-23560800 ZNF genes & repeats Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr19:23549200-23568600 ZNF genes & repeats Duodenum Mucosa Duodenum
17 chr19:23549200-23570200 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
18 chr19:23549200-23577000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr19:23549400-23557600 ZNF genes & repeats iPS-18 Cell Line embryonic stem cell
20 chr19:23549400-23557800 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
21 chr19:23549600-23576000 Weak transcription Hela-S3 cervix
22 chr19:23549800-23556400 Weak transcription ES-WA7 Cell Line embryonic stem cell
23 chr19:23549800-23562400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr19:23550200-23556400 Weak transcription Fetal Heart heart
25 chr19:23551600-23557000 ZNF genes & repeats Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
26 chr19:23551600-23576400 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr19:23552000-23557000 Strong transcription Skeletal Muscle Male skeletal muscle
28 chr19:23552200-23562000 Weak transcription Right Ventricle heart
29 chr19:23552400-23562600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
30 chr19:23552800-23557200 ZNF genes & repeats Primary B cells from peripheral blood blood
31 chr19:23552800-23576000 ZNF genes & repeats Dnd41 blood
32 chr19:23553000-23556600 ZNF genes & repeats Primary T killer naive cells fromperipheralblood blood
33 chr19:23553000-23556800 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
34 chr19:23553000-23556800 Strong transcription Brain Cingulate Gyrus brain
35 chr19:23553000-23556800 ZNF genes & repeats Rectal Mucosa Donor 31 rectum
36 chr19:23553000-23557000 ZNF genes & repeats Brain Germinal Matrix brain
37 chr19:23553000-23557000 ZNF genes & repeats Fetal Kidney kidney
38 chr19:23553000-23557000 ZNF genes & repeats GM12878-XiMat blood
39 chr19:23553000-23557600 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
40 chr19:23553000-23557800 ZNF genes & repeats Primary T cells from cord blood blood
41 chr19:23553000-23560600 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
42 chr19:23553000-23560600 ZNF genes & repeats Primary T helper cells PMA-I stimulated --
43 chr19:23553000-23560800 ZNF genes & repeats Fetal Brain Female brain
44 chr19:23553000-23576400 ZNF genes & repeats Primary hematopoietic stem cells blood
45 chr19:23553000-23576800 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
46 chr19:23553000-23577000 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
47 chr19:23553200-23556600 Strong transcription Rectal Smooth Muscle rectum
48 chr19:23553200-23556800 Strong transcription Brain Inferior Temporal Lobe brain
49 chr19:23553200-23556800 ZNF genes & repeats Fetal Intestine Large intestine
50 chr19:23553200-23557000 Strong transcription Brain Anterior Caudate brain

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