Variant report

Variant rs1820676
Chromosome Location chr19:23512109-23512110
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23490000-23514200 Weak transcription Stomach Smooth Muscle stomach
2 chr19:23491800-23512800 Weak transcription Left Ventricle heart
3 chr19:23494400-23518200 Weak transcription Placenta Amnion Placenta Amnion
4 chr19:23496600-23512200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr19:23500400-23516600 Weak transcription Right Ventricle heart
6 chr19:23501200-23512600 Weak transcription Brain Cingulate Gyrus brain
7 chr19:23506000-23522000 ZNF genes & repeats Adipose Nuclei Adipose
8 chr19:23506000-23548400 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
9 chr19:23506200-23512600 Weak transcription Pancreas Pancrea
10 chr19:23506400-23515000 Weak transcription Brain Anterior Caudate brain
11 chr19:23506400-23522200 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr19:23506600-23518400 Weak transcription Brain Substantia Nigra brain
13 chr19:23506800-23513600 Weak transcription Fetal Heart heart
14 chr19:23507000-23514200 Weak transcription Breast Myoepithelial Primary Cells Breast
15 chr19:23507400-23516600 Weak transcription Placenta Placenta
16 chr19:23507600-23514200 Weak transcription Muscle Satellite Cultured Cells --
17 chr19:23508200-23517000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
18 chr19:23508400-23518200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
19 chr19:23508400-23518400 Weak transcription Colon Smooth Muscle Colon
20 chr19:23508600-23518400 Weak transcription Brain Inferior Temporal Lobe brain
21 chr19:23509400-23512600 Weak transcription Ovary ovary
22 chr19:23509600-23513800 Weak transcription HSMMtube muscle
23 chr19:23509800-23512800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
24 chr19:23510200-23513200 Weak transcription HSMM muscle
25 chr19:23510800-23514800 ZNF genes & repeats Duodenum Smooth Muscle Duodenum
26 chr19:23510800-23522600 ZNF genes & repeats Pancreatic Islets Pancreatic Islet
27 chr19:23511000-23512800 ZNF genes & repeats Duodenum Mucosa Duodenum
28 chr19:23511000-23522800 ZNF genes & repeats Fetal Lung lung
29 chr19:23511000-23523400 ZNF genes & repeats Liver Liver
30 chr19:23511200-23513800 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr19:23511200-23515400 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr19:23511200-23518200 Weak transcription Colonic Mucosa Colon
33 chr19:23511400-23512200 Weak transcription Cortex derived primary cultured neurospheres brain
34 chr19:23511400-23512400 Weak transcription Brain Hippocampus Middle brain
35 chr19:23511600-23512600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
36 chr19:23511800-23512600 Weak transcription Brain Germinal Matrix brain
37 chr19:23511800-23514000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
38 chr19:23512000-23512800 ZNF genes & repeats Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr19:23512000-23513400 ZNF genes & repeats IMR90 fetal lung fibroblasts Cell Line lung
40 chr19:23512000-23513400 ZNF genes & repeats Rectal Mucosa Donor 31 rectum
41 chr19:23512000-23514400 Weak transcription Fetal Adrenal Gland Adrenal Gland
42 chr19:23512000-23522000 ZNF genes & repeats Fetal Brain Female brain
43 chr19:23512000-23523400 ZNF genes & repeats Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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