Variant report

Variant rs11667562
Chromosome Location chr19:23513267-23513268
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23490000-23514200 Weak transcription Stomach Smooth Muscle stomach
2 chr19:23494400-23518200 Weak transcription Placenta Amnion Placenta Amnion
3 chr19:23500400-23516600 Weak transcription Right Ventricle heart
4 chr19:23506000-23522000 ZNF genes & repeats Adipose Nuclei Adipose
5 chr19:23506000-23548400 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
6 chr19:23506400-23515000 Weak transcription Brain Anterior Caudate brain
7 chr19:23506400-23522200 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
8 chr19:23506600-23518400 Weak transcription Brain Substantia Nigra brain
9 chr19:23506800-23513600 Weak transcription Fetal Heart heart
10 chr19:23507000-23514200 Weak transcription Breast Myoepithelial Primary Cells Breast
11 chr19:23507400-23516600 Weak transcription Placenta Placenta
12 chr19:23507600-23514200 Weak transcription Muscle Satellite Cultured Cells --
13 chr19:23508200-23517000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr19:23508400-23518200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr19:23508400-23518400 Weak transcription Colon Smooth Muscle Colon
16 chr19:23508600-23518400 Weak transcription Brain Inferior Temporal Lobe brain
17 chr19:23509600-23513800 Weak transcription HSMMtube muscle
18 chr19:23510800-23514800 ZNF genes & repeats Duodenum Smooth Muscle Duodenum
19 chr19:23510800-23522600 ZNF genes & repeats Pancreatic Islets Pancreatic Islet
20 chr19:23511000-23522800 ZNF genes & repeats Fetal Lung lung
21 chr19:23511000-23523400 ZNF genes & repeats Liver Liver
22 chr19:23511200-23513800 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr19:23511200-23515400 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr19:23511200-23518200 Weak transcription Colonic Mucosa Colon
25 chr19:23511800-23514000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
26 chr19:23512000-23513400 ZNF genes & repeats IMR90 fetal lung fibroblasts Cell Line lung
27 chr19:23512000-23513400 ZNF genes & repeats Rectal Mucosa Donor 31 rectum
28 chr19:23512000-23514400 Weak transcription Fetal Adrenal Gland Adrenal Gland
29 chr19:23512000-23522000 ZNF genes & repeats Fetal Brain Female brain
30 chr19:23512000-23523400 ZNF genes & repeats Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr19:23512200-23514000 Strong transcription Cortex derived primary cultured neurospheres brain
32 chr19:23512200-23521400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr19:23512400-23514400 ZNF genes & repeats Fetal Kidney kidney
34 chr19:23512400-23520000 ZNF genes & repeats H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr19:23512400-23540400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr19:23512400-23548400 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr19:23512600-23513400 ZNF genes & repeats Foreskin Fibroblast Primary Cells skin01 Skin
38 chr19:23512600-23513400 ZNF genes & repeats Aorta Aorta
39 chr19:23512600-23513400 ZNF genes & repeats Brain Germinal Matrix brain
40 chr19:23512600-23513400 ZNF genes & repeats Pancreas Pancrea
41 chr19:23512600-23516200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
42 chr19:23512600-23516600 Weak transcription HUES64 Cell Line embryonic stem cell
43 chr19:23512600-23519600 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
44 chr19:23512600-23520000 ZNF genes & repeats Ovary ovary
45 chr19:23512800-23513800 Weak transcription Primary hematopoietic stem cells short term culture blood
46 chr19:23512800-23514200 Weak transcription Sigmoid Colon Sigmoid Colon
47 chr19:23512800-23514600 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
48 chr19:23512800-23515400 Weak transcription Brain Hippocampus Middle brain
49 chr19:23512800-23516400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
50 chr19:23513000-23513800 Weak transcription Brain Cingulate Gyrus brain

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