Variant report

Variant	rs12468102
Chromosome Location	chr2:20991099-20991100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12469525	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12476001	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16982023	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16982026	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs16988072	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16988079	1.00[CEU][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17390286	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340601	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs340602	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs340603	0.92[EUR][1000 genomes]
rs340604	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs340606	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs340607	0.92[EUR][1000 genomes]
rs472692	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs490710	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs492399	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4971527	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4971529	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs518968	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs519025	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs575246	0.92[EUR][1000 genomes]
rs597781	0.96[EUR][1000 genomes]
rs645100	0.92[EUR][1000 genomes]
rs649018	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs666471	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs685246	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7600933	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs839915	0.96[EUR][1000 genomes]

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20926400-20995000	Weak transcription	Hela-S3	cervix
2	chr2:20951800-20993200	Weak transcription	Colon Smooth Muscle	Colon
3	chr2:20954200-21001200	Weak transcription	NH-A	brain
4	chr2:20958600-20995800	Weak transcription	HMEC	breast
5	chr2:20959000-20995400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr2:20959200-20997000	Weak transcription	Brain Substantia Nigra	brain
7	chr2:20960800-20996200	Weak transcription	HSMMtube	muscle
8	chr2:20964000-20996000	Weak transcription	Osteobl	bone
9	chr2:20965800-20993200	Weak transcription	Fetal Brain Female	brain
10	chr2:20965800-21003400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:20968400-20993800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:20968400-21003000	Weak transcription	Pancreas	Pancrea
13	chr2:20968600-20993600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr2:20968600-20996200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr2:20968800-20992600	Weak transcription	Spleen	Spleen
16	chr2:20969000-20994000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:20969000-21003000	Weak transcription	Gastric	stomach
18	chr2:20970800-20992800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr2:20970800-20996400	Weak transcription	Brain Anterior Caudate	brain
20	chr2:20973200-21003000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr2:20974600-20993800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr2:20974600-20994000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr2:20974600-21021800	Weak transcription	Thymus	Thymus
24	chr2:20974800-21000200	Weak transcription	HSMM	muscle
25	chr2:20975000-20993200	Weak transcription	Fetal Kidney	kidney
26	chr2:20975000-20996200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr2:20980800-20997800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr2:20983000-20992600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr2:20983400-20991600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr2:20983400-20993400	Strong transcription	Primary B cells from peripheral blood	blood
31	chr2:20983400-20999000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr2:20984200-20997000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr2:20984800-20996400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr2:20986400-20991400	Strong transcription	Primary T cells from cord blood	blood
35	chr2:20986400-20991600	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr2:20986800-20992800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr2:20986800-20995800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr2:20987000-20993800	Weak transcription	A549	lung
39	chr2:20987000-20995800	Weak transcription	Placenta	Placenta
40	chr2:20987200-20991400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr2:20987200-20997800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr2:20987400-20997000	Weak transcription	Brain Angular Gyrus	brain
43	chr2:20987600-20991400	Strong transcription	HepG2	liver
44	chr2:20987800-20991400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr2:20988400-20991400	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr2:20988600-20991200	Strong transcription	K562	blood
47	chr2:20988600-20991400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr2:20988600-20991600	Strong transcription	Primary B cells from cord blood	blood
49	chr2:20988800-20991400	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr2:20988800-20991400	Strong transcription	GM12878-XiMat	blood

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