Variant report

Variant	rs12469525
Chromosome Location	chr2:20992959-20992960
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:20985087..20987533-chr2:20991199..20993590,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12468102	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12476001	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16982023	1.00[CEU][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16982026	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs16988072	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16988079	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17390286	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340601	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs340602	1.00[CEU][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs340603	0.92[EUR][1000 genomes]
rs340604	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs340606	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs340607	0.92[EUR][1000 genomes]
rs472692	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs490710	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs492399	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4971527	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4971529	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs518968	1.00[CEU][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs519025	1.00[CEU][hapmap];0.81[TSI][hapmap];0.92[EUR][1000 genomes]
rs575246	0.92[EUR][1000 genomes]
rs597781	0.96[EUR][1000 genomes]
rs645100	0.92[EUR][1000 genomes]
rs649018	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs666471	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs685246	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7600933	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs839915	0.96[EUR][1000 genomes]

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20926400-20995000	Weak transcription	Hela-S3	cervix
2	chr2:20951800-20993200	Weak transcription	Colon Smooth Muscle	Colon
3	chr2:20954200-21001200	Weak transcription	NH-A	brain
4	chr2:20958600-20995800	Weak transcription	HMEC	breast
5	chr2:20959000-20995400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr2:20959200-20997000	Weak transcription	Brain Substantia Nigra	brain
7	chr2:20960800-20996200	Weak transcription	HSMMtube	muscle
8	chr2:20964000-20996000	Weak transcription	Osteobl	bone
9	chr2:20965800-20993200	Weak transcription	Fetal Brain Female	brain
10	chr2:20965800-21003400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:20968400-20993800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:20968400-21003000	Weak transcription	Pancreas	Pancrea
13	chr2:20968600-20993600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr2:20968600-20996200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr2:20969000-20994000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr2:20969000-21003000	Weak transcription	Gastric	stomach
17	chr2:20970800-20996400	Weak transcription	Brain Anterior Caudate	brain
18	chr2:20973200-21003000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr2:20974600-20993800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr2:20974600-20994000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr2:20974600-21021800	Weak transcription	Thymus	Thymus
22	chr2:20974800-21000200	Weak transcription	HSMM	muscle
23	chr2:20975000-20993200	Weak transcription	Fetal Kidney	kidney
24	chr2:20975000-20996200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr2:20980800-20997800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr2:20983400-20993400	Strong transcription	Primary B cells from peripheral blood	blood
27	chr2:20983400-20999000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr2:20984200-20997000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr2:20984800-20996400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr2:20986800-20995800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr2:20987000-20993800	Weak transcription	A549	lung
32	chr2:20987000-20995800	Weak transcription	Placenta	Placenta
33	chr2:20987200-20997800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr2:20987400-20997000	Weak transcription	Brain Angular Gyrus	brain
35	chr2:20989200-20997200	Weak transcription	Esophagus	oesophagus
36	chr2:20989200-20999200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr2:20989200-21006000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr2:20989400-20994000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr2:20989400-20996200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr2:20989600-20993000	Weak transcription	Fetal Intestine Small	intestine
41	chr2:20989600-20993800	Weak transcription	Ovary	ovary
42	chr2:20989600-20994400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr2:20989600-20996000	Weak transcription	Fetal Brain Male	brain
44	chr2:20989600-20999200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr2:20989600-21003200	Weak transcription	Left Ventricle	heart
46	chr2:20989600-21009000	Weak transcription	Fetal Lung	lung
47	chr2:20989600-21010400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr2:20989800-20993600	Weak transcription	Fetal Intestine Large	intestine
49	chr2:20989800-20995800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr2:20989800-20996400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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