Variant report

Variant	rs17390286
Chromosome Location	chr2:20988892-20988893
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12468102	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12469525	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12476001	0.96[EUR][1000 genomes]
rs16982023	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16982026	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs16988072	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs16988079	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs340601	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs340602	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs340603	0.92[EUR][1000 genomes]
rs340604	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs340606	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs340607	0.92[EUR][1000 genomes]
rs472692	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs490710	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs492399	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4971527	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4971529	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs518968	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs519025	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs575246	0.92[EUR][1000 genomes]
rs597781	0.96[EUR][1000 genomes]
rs645100	0.92[EUR][1000 genomes]
rs649018	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs666471	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs685246	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7600933	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs839915	0.96[EUR][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20926400-20995000	Weak transcription	Hela-S3	cervix
2	chr2:20951800-20993200	Weak transcription	Colon Smooth Muscle	Colon
3	chr2:20952800-20990400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr2:20953000-20989400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr2:20954200-21001200	Weak transcription	NH-A	brain
6	chr2:20958600-20995800	Weak transcription	HMEC	breast
7	chr2:20959000-20995400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr2:20959200-20997000	Weak transcription	Brain Substantia Nigra	brain
9	chr2:20960600-20989200	Weak transcription	Brain Hippocampus Middle	brain
10	chr2:20960800-20989000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:20960800-20996200	Weak transcription	HSMMtube	muscle
12	chr2:20964000-20996000	Weak transcription	Osteobl	bone
13	chr2:20965800-20993200	Weak transcription	Fetal Brain Female	brain
14	chr2:20965800-21003400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr2:20968400-20989000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr2:20968400-20993800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr2:20968400-21003000	Weak transcription	Pancreas	Pancrea
18	chr2:20968600-20993600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr2:20968600-20996200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr2:20968800-20992600	Weak transcription	Spleen	Spleen
21	chr2:20969000-20994000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr2:20969000-21003000	Weak transcription	Gastric	stomach
23	chr2:20970800-20992800	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr2:20970800-20996400	Weak transcription	Brain Anterior Caudate	brain
25	chr2:20972200-20990000	Weak transcription	NHDF-Ad	bronchial
26	chr2:20973200-21003000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr2:20973800-20989000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr2:20974200-20989000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr2:20974600-20991000	Weak transcription	Brain Cingulate Gyrus	brain
30	chr2:20974600-20993800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr2:20974600-20994000	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr2:20974600-21021800	Weak transcription	Thymus	Thymus
33	chr2:20974800-21000200	Weak transcription	HSMM	muscle
34	chr2:20975000-20993200	Weak transcription	Fetal Kidney	kidney
35	chr2:20975000-20996200	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr2:20980800-20997800	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr2:20983000-20992600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:20983400-20991600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr2:20983400-20993400	Strong transcription	Primary B cells from peripheral blood	blood
40	chr2:20983400-20999000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr2:20984200-20997000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr2:20984600-20990600	Strong transcription	Liver	Liver
43	chr2:20984800-20996400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr2:20986200-20989800	Strong transcription	Fetal Intestine Large	intestine
45	chr2:20986400-20989800	Strong transcription	Duodenum Mucosa	Duodenum
46	chr2:20986400-20991400	Strong transcription	Primary T cells from cord blood	blood
47	chr2:20986400-20991600	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr2:20986800-20989000	Weak transcription	Fetal Brain Male	brain
49	chr2:20986800-20989800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr2:20986800-20992800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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