Variant report

Variant	rs340607
Chromosome Location	chr2:21023649-21023650
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20850782..20852679-chr2:21021448..21023947,2	K562	blood:
2	chr2:21021863..21023971-chr2:97534039..97536647,2	MCF-7	breast:
3	chr2:20550750..20552615-chr2:21021758..21023805,2	K562	blood:
4	chr2:21004442..21007012-chr2:21022957..21025517,2	MCF-7	breast:
5	chr15:52859630..52861792-chr2:21021008..21023718,2	MCF-7	breast:
6	chr2:21021759..21024284-chr2:21059514..21062334,2	MCF-7	breast:
7	chr2:21023404..21026018-chr2:21030811..21034294,3	MCF-7	breast:
8	chr2:20960384..20962509-chr2:21023196..21025705,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000168758	Chromatin interaction
ENSG00000055917	Chromatin interaction
ENSG00000118960	Chromatin interaction
ENSG00000128989	Chromatin interaction
ENSG00000236436	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12468102	0.92[EUR][1000 genomes]
rs12469525	0.92[EUR][1000 genomes]
rs12476001	0.96[EUR][1000 genomes]
rs16982023	0.92[EUR][1000 genomes]
rs16982026	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16988072	0.96[EUR][1000 genomes]
rs16988079	0.96[EUR][1000 genomes]
rs173121	0.81[AFR][1000 genomes]
rs17390286	0.92[EUR][1000 genomes]
rs340601	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340602	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340603	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340604	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340615	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs472692	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs490710	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs492399	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4971527	0.96[EUR][1000 genomes]
rs4971529	0.96[EUR][1000 genomes]
rs518968	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs519025	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs575246	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57864736	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs597781	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs645100	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs645150	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs649018	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs666471	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs685246	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7600933	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs839915	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21021600-21023800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:21021800-21023800	Active TSS	Placenta	Placenta
3	chr2:21023200-21024000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:21023400-21023800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr2:21023400-21023800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr2:21023400-21023800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr2:21023400-21023800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:21023400-21023800	Enhancers	Fetal Muscle Trunk	muscle
9	chr2:21023400-21024000	Enhancers	Primary T cells fromperipheralblood	blood
10	chr2:21023400-21024000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr2:21023400-21024000	Enhancers	HMEC	breast
12	chr2:21023400-21024000	Weak transcription	K562	blood
13	chr2:21023400-21024200	Enhancers	NHEK	skin
14	chr2:21023400-21024400	Enhancers	HSMMtube	muscle
15	chr2:21023600-21023800	Weak transcription	Hela-S3	cervix

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