Variant report

Variant	rs518968
Chromosome Location	chr2:21016373-21016374
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:21014812..21017063-chr2:21017356..21019145,3	K562	blood:
2	chr2:21014104..21017063-chr2:21017272..21019338,3	K562	blood:
3	chr2:21010027..21013837-chr2:21015283..21019599,5	K562	blood:
4	chr2:20849708..20853710-chr2:21016124..21019495,4	MCF-7	breast:
5	chr2:21010027..21012581-chr2:21013970..21016783,3	K562	blood:
6	chr2:21013463..21017871-chr2:21032418..21036706,3	K562	blood:

Variant related genes	Relation type
ENSG00000118960	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12468102	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12469525	1.00[CEU][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs12476001	0.96[EUR][1000 genomes]
rs16982023	1.00[CEU][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs16982026	1.00[CEU][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.90[TSI][hapmap];0.89[YRI][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16988048	0.94[GIH][hapmap]
rs16988072	1.00[CEU][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs16988079	1.00[CEU][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs17390286	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs340601	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340602	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340603	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340604	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340606	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340607	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340615	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs472692	1.00[CEU][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs490710	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs492399	1.00[CEU][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4971527	1.00[CEU][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs4971529	0.96[EUR][1000 genomes]
rs514459	0.86[YRI][hapmap]
rs519025	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs535022	0.89[LWK][hapmap];0.89[YRI][hapmap]
rs575246	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57864736	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs597781	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs645100	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs645150	0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs649018	1.00[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs666471	1.00[CEU][hapmap];0.88[LWK][hapmap];0.89[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs685246	1.00[CEU][hapmap];0.89[YRI][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7600933	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs839915	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20974600-21021800	Weak transcription	Thymus	Thymus
2	chr2:20994800-21021600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr2:20994800-21021600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr2:20994800-21021800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr2:20995000-21017600	Weak transcription	A549	lung
6	chr2:20995200-21021600	Weak transcription	K562	blood
7	chr2:20997400-21018600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:20997400-21021600	Weak transcription	Primary B cells from cord blood	blood
9	chr2:20998200-21021800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr2:21000200-21017600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:21000400-21021400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:21003600-21021600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr2:21004200-21018200	Weak transcription	HepG2	liver
14	chr2:21005400-21018400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr2:21006200-21021600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr2:21006400-21021600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr2:21010400-21021800	Weak transcription	Primary T cells from cord blood	blood
18	chr2:21010600-21021600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr2:21011600-21018800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr2:21013600-21018400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr2:21015000-21021800	Weak transcription	Fetal Kidney	kidney

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