The 2.0 version of rSNPBase

Variant report

Variant rs12521539
Chromosome Location chr5:80157982-80157983
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:105 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:80042800-80173400 Weak transcription Right Ventricle heart
2 chr5:80087800-80167400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr5:80091400-80181000 Weak transcription Small Intestine intestine
4 chr5:80125200-80161600 Weak transcription Skeletal Muscle Female skeletal muscle
5 chr5:80141200-80161000 Weak transcription Brain Cingulate Gyrus brain
6 chr5:80141200-80178800 Weak transcription Placenta Amnion Placenta Amnion
7 chr5:80143000-80175400 Weak transcription HMEC breast
8 chr5:80145600-80172800 Weak transcription Skeletal Muscle Male skeletal muscle
9 chr5:80145600-80175600 Weak transcription Primary T killer memory cells from peripheral blood blood
10 chr5:80145600-80181000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr5:80145800-80167400 Weak transcription Placenta Placenta
12 chr5:80145800-80173400 Weak transcription Colonic Mucosa Colon
13 chr5:80146000-80173400 Weak transcription Esophagus oesophagus
14 chr5:80146400-80162600 Weak transcription Fetal Stomach stomach
15 chr5:80146400-80162800 Weak transcription Gastric stomach
16 chr5:80146400-80167200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr5:80146400-80167200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
18 chr5:80146400-80170600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr5:80146400-80173400 Weak transcription Brain Substantia Nigra brain
20 chr5:80146600-80162000 Weak transcription Stomach Smooth Muscle stomach
21 chr5:80146800-80161600 Weak transcription Fetal Muscle Leg muscle
22 chr5:80146800-80161800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr5:80148400-80167400 Weak transcription HSMM muscle
24 chr5:80148600-80175600 Weak transcription Primary T helper naive cells from peripheral blood blood
25 chr5:80148800-80173200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
26 chr5:80149000-80161800 Weak transcription HepG2 liver
27 chr5:80149200-80166000 Weak transcription K562 blood
28 chr5:80149200-80167200 Weak transcription Hela-S3 cervix
29 chr5:80149200-80176200 Weak transcription Colon Smooth Muscle Colon
30 chr5:80149800-80180000 Weak transcription Psoas Muscle Psoas
31 chr5:80151200-80173000 Weak transcription Fetal Brain Male brain
32 chr5:80151400-80161800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
33 chr5:80151600-80162800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr5:80151600-80175600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
35 chr5:80151800-80162600 Weak transcription Duodenum Smooth Muscle Duodenum
36 chr5:80152000-80160000 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr5:80152000-80160800 Weak transcription Ovary ovary
38 chr5:80152000-80161800 Weak transcription Fetal Adrenal Gland Adrenal Gland
39 chr5:80152000-80167000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
40 chr5:80152000-80167200 Weak transcription Aorta Aorta
41 chr5:80152000-80170800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
42 chr5:80152000-80171000 Weak transcription Lung lung
43 chr5:80152000-80173400 Weak transcription Fetal Muscle Trunk muscle
44 chr5:80152000-80173400 Weak transcription Pancreas Pancrea
45 chr5:80152000-80173400 Weak transcription Thymus Thymus
46 chr5:80152200-80161000 Weak transcription Primary T regulatory cells fromperipheralblood blood
47 chr5:80152200-80161600 Weak transcription Left Ventricle heart
48 chr5:80152200-80170800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
49 chr5:80152800-80173200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr5:80152800-80179000 Weak transcription Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015