The 2.0 version of rSNPBase

Variant report

Variant rs6877065
Chromosome Location chr5:80142977-80142978
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:80042800-80173400 Weak transcription Right Ventricle heart
2 chr5:80087800-80167400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr5:80091200-80144400 Weak transcription Stomach Smooth Muscle stomach
4 chr5:80091400-80181000 Weak transcription Small Intestine intestine
5 chr5:80103800-80144600 Weak transcription Gastric stomach
6 chr5:80110600-80145200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
7 chr5:80119000-80145000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr5:80120800-80143800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
9 chr5:80125000-80143600 Weak transcription Left Ventricle heart
10 chr5:80125000-80143800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
11 chr5:80125000-80144600 Weak transcription Rectal Mucosa Donor 29 rectum
12 chr5:80125000-80145000 Weak transcription Aorta Aorta
13 chr5:80125200-80143800 Weak transcription Fetal Muscle Leg muscle
14 chr5:80125200-80144200 Weak transcription Primary B cells from peripheral blood blood
15 chr5:80125200-80144400 Weak transcription Primary T regulatory cells fromperipheralblood blood
16 chr5:80125200-80144400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr5:80125200-80145000 Weak transcription Primary T helper cells fromperipheralblood blood
18 chr5:80125200-80145000 Weak transcription Adipose Nuclei Adipose
19 chr5:80125200-80145400 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr5:80125200-80151400 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr5:80125200-80161600 Weak transcription Skeletal Muscle Female skeletal muscle
22 chr5:80125400-80143800 Weak transcription Primary hematopoietic stem cells blood
23 chr5:80125400-80144200 Weak transcription Duodenum Smooth Muscle Duodenum
24 chr5:80125400-80145000 Weak transcription HepG2 liver
25 chr5:80125400-80145200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr5:80125600-80144200 Weak transcription Duodenum Mucosa Duodenum
27 chr5:80125800-80143800 Weak transcription Primary hematopoietic stem cells short term culture blood
28 chr5:80125800-80145000 Weak transcription Fetal Lung lung
29 chr5:80128000-80145400 Weak transcription Brain Substantia Nigra brain
30 chr5:80134200-80143800 Weak transcription Primary T cells from cord blood blood
31 chr5:80134200-80144600 Weak transcription Primary B cells from cord blood blood
32 chr5:80135400-80145200 Weak transcription Cortex derived primary cultured neurospheres brain
33 chr5:80136200-80145000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
34 chr5:80137600-80152600 Weak transcription Rectal Smooth Muscle rectum
35 chr5:80139000-80144400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr5:80139800-80144800 Weak transcription Brain Hippocampus Middle brain
37 chr5:80140000-80144800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
38 chr5:80140000-80145000 Weak transcription Skeletal Muscle Male skeletal muscle
39 chr5:80140000-80145000 Weak transcription Thymus Thymus
40 chr5:80140200-80145000 Weak transcription Pancreas Pancrea
41 chr5:80140400-80145400 Weak transcription Brain Inferior Temporal Lobe brain
42 chr5:80140600-80144800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr5:80140600-80145000 Weak transcription Spleen Spleen
44 chr5:80140600-80145400 Weak transcription Colonic Mucosa Colon
45 chr5:80141000-80145800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr5:80141200-80144200 Weak transcription Primary T helper naive cells fromperipheralblood blood
47 chr5:80141200-80161000 Weak transcription Brain Cingulate Gyrus brain
48 chr5:80141200-80178800 Weak transcription Placenta Amnion Placenta Amnion
49 chr5:80141600-80143000 ZNF genes & repeats Primary monocytes fromperipheralblood blood
50 chr5:80141600-80143600 Strong transcription Monocytes-CD14+_RO01746 blood

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Last update: Aug 31, 2015