The 2.0 version of rSNPBase

Variant report

Variant rs2112415
Chromosome Location chr5:80182069-80182070
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:80163200-80186600 Weak transcription HSMMtube muscle
2 chr5:80163200-80188400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr5:80167800-80187200 Weak transcription H1 Cell Line embryonic stem cell
4 chr5:80169600-80190600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr5:80171200-80183600 Weak transcription Primary hematopoietic stem cells blood
6 chr5:80171200-80186400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
7 chr5:80171400-80196400 Weak transcription Hela-S3 cervix
8 chr5:80171800-80186800 Weak transcription Cortex derived primary cultured neurospheres brain
9 chr5:80172200-80186400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr5:80173600-80208000 Weak transcription Brain Inferior Temporal Lobe brain
11 chr5:80173800-80186200 Weak transcription Fetal Brain Female brain
12 chr5:80173800-80188600 Weak transcription Primary T helper cells PMA-I stimulated --
13 chr5:80174000-80183000 Weak transcription Gastric stomach
14 chr5:80174000-80185000 Weak transcription Thymus Thymus
15 chr5:80174000-80185000 Weak transcription Dnd41 blood
16 chr5:80174000-80185600 Weak transcription Lung lung
17 chr5:80174000-80186400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
18 chr5:80174000-80186400 Weak transcription Stomach Smooth Muscle stomach
19 chr5:80174000-80186600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr5:80174000-80186600 Weak transcription Fetal Lung lung
21 chr5:80174000-80186800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr5:80174000-80187200 Weak transcription Rectal Mucosa Donor 31 rectum
23 chr5:80174000-80187200 Weak transcription Right Ventricle heart
24 chr5:80174000-80188200 Weak transcription Fetal Muscle Trunk muscle
25 chr5:80174000-80188400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
26 chr5:80174000-80188400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
27 chr5:80174000-80188600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
28 chr5:80174000-80188600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
29 chr5:80174000-80190200 Weak transcription Brain Anterior Caudate brain
30 chr5:80174000-80190800 Weak transcription Brain Cingulate Gyrus brain
31 chr5:80174000-80191200 Weak transcription Primary T regulatory cells fromperipheralblood blood
32 chr5:80174000-80191400 Weak transcription Spleen Spleen
33 chr5:80174000-80197000 Weak transcription Left Ventricle heart
34 chr5:80174200-80183600 Weak transcription Fetal Stomach stomach
35 chr5:80174200-80184600 Weak transcription Rectal Mucosa Donor 29 rectum
36 chr5:80174200-80185200 Weak transcription Primary monocytes fromperipheralblood blood
37 chr5:80174200-80187200 Weak transcription Primary B cells from peripheral blood blood
38 chr5:80174200-80187400 Weak transcription Primary hematopoietic stem cells short term culture blood
39 chr5:80174200-80187800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
40 chr5:80174200-80188000 Weak transcription Brain Angular Gyrus brain
41 chr5:80174200-80192000 Weak transcription ES-I3 Cell Line embryonic stem cell
42 chr5:80174400-80185800 Weak transcription Primary B cells from cord blood blood
43 chr5:80175400-80185800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
44 chr5:80177400-80185000 Weak transcription Aorta Aorta
45 chr5:80177400-80185200 Weak transcription Primary T cells from cord blood blood
46 chr5:80177400-80186200 Weak transcription Duodenum Smooth Muscle Duodenum
47 chr5:80177800-80186400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr5:80178000-80185800 Weak transcription Monocytes-CD14+_RO01746 blood
49 chr5:80178000-80186600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
50 chr5:80178400-80186400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015