The 2.0 version of rSNPBase

Variant report

Variant rs888867
Chromosome Location chr5:80135013-80135014
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:80042800-80173400 Weak transcription Right Ventricle heart
2 chr5:80087800-80167400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr5:80091200-80144400 Weak transcription Stomach Smooth Muscle stomach
4 chr5:80091400-80181000 Weak transcription Small Intestine intestine
5 chr5:80103800-80144600 Weak transcription Gastric stomach
6 chr5:80110600-80145200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
7 chr5:80119000-80145000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr5:80120800-80143800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
9 chr5:80125000-80141600 Weak transcription Primary monocytes fromperipheralblood blood
10 chr5:80125000-80141600 Weak transcription Ovary ovary
11 chr5:80125000-80142000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
12 chr5:80125000-80142000 Weak transcription Fetal Stomach stomach
13 chr5:80125000-80142200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr5:80125000-80142200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr5:80125000-80142200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
16 chr5:80125000-80143600 Weak transcription Left Ventricle heart
17 chr5:80125000-80143800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
18 chr5:80125000-80144600 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr5:80125000-80145000 Weak transcription Aorta Aorta
20 chr5:80125200-80141600 Weak transcription Monocytes-CD14+_RO01746 blood
21 chr5:80125200-80142000 Weak transcription Fetal Intestine Small intestine
22 chr5:80125200-80143800 Weak transcription Fetal Muscle Leg muscle
23 chr5:80125200-80144200 Weak transcription Primary B cells from peripheral blood blood
24 chr5:80125200-80144400 Weak transcription Primary T regulatory cells fromperipheralblood blood
25 chr5:80125200-80144400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
26 chr5:80125200-80145000 Weak transcription Primary T helper cells fromperipheralblood blood
27 chr5:80125200-80145000 Weak transcription Adipose Nuclei Adipose
28 chr5:80125200-80145400 Weak transcription Sigmoid Colon Sigmoid Colon
29 chr5:80125200-80151400 Weak transcription Rectal Mucosa Donor 31 rectum
30 chr5:80125200-80161600 Weak transcription Skeletal Muscle Female skeletal muscle
31 chr5:80125400-80141800 Weak transcription Liver Liver
32 chr5:80125400-80143800 Weak transcription Primary hematopoietic stem cells blood
33 chr5:80125400-80144200 Weak transcription Duodenum Smooth Muscle Duodenum
34 chr5:80125400-80145000 Weak transcription HepG2 liver
35 chr5:80125400-80145200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr5:80125600-80144200 Weak transcription Duodenum Mucosa Duodenum
37 chr5:80125800-80143800 Weak transcription Primary hematopoietic stem cells short term culture blood
38 chr5:80125800-80145000 Weak transcription Fetal Lung lung
39 chr5:80128000-80145400 Weak transcription Brain Substantia Nigra brain
40 chr5:80130200-80142000 Weak transcription Breast Myoepithelial Primary Cells Breast
41 chr5:80134200-80143800 Weak transcription Primary T cells from cord blood blood
42 chr5:80134200-80144600 Weak transcription Primary B cells from cord blood blood

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Last update: Aug 31, 2015