The 2.0 version of rSNPBase

Variant report

Variant rs1679115
Chromosome Location chr5:80122570-80122571
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:80042800-80173400 Weak transcription Right Ventricle heart
2 chr5:80085200-80127600 Weak transcription Primary T helper naive cells from peripheral blood blood
3 chr5:80087400-80132800 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr5:80087800-80167400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr5:80090400-80124600 Weak transcription Colon Smooth Muscle Colon
6 chr5:80090600-80124000 Weak transcription Primary T helper cells PMA-I stimulated --
7 chr5:80091200-80144400 Weak transcription Stomach Smooth Muscle stomach
8 chr5:80091400-80124600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
9 chr5:80091400-80124600 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr5:80091400-80124600 Weak transcription Rectal Smooth Muscle rectum
11 chr5:80091400-80181000 Weak transcription Small Intestine intestine
12 chr5:80091800-80125200 Weak transcription Osteobl bone
13 chr5:80093000-80124200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr5:80093800-80123800 Weak transcription Pancreas Pancrea
15 chr5:80094800-80124000 Weak transcription GM12878-XiMat blood
16 chr5:80097000-80124400 Weak transcription Brain Cingulate Gyrus brain
17 chr5:80103800-80144600 Weak transcription Gastric stomach
18 chr5:80107200-80123800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
19 chr5:80110000-80123800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
20 chr5:80110000-80124800 Weak transcription Primary T helper naive cells fromperipheralblood blood
21 chr5:80110600-80124600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr5:80110600-80145200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
23 chr5:80110800-80124200 Weak transcription Fetal Muscle Trunk muscle
24 chr5:80110800-80124400 Weak transcription Skeletal Muscle Female skeletal muscle
25 chr5:80110800-80124600 Weak transcription Placenta Placenta
26 chr5:80110800-80124800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr5:80111000-80123600 Weak transcription Primary neutrophils fromperipheralblood blood
28 chr5:80111000-80123600 Weak transcription Primary T regulatory cells fromperipheralblood blood
29 chr5:80111000-80123800 Weak transcription Primary T helper cells fromperipheralblood blood
30 chr5:80111000-80124000 Weak transcription HepG2 liver
31 chr5:80111400-80124600 Weak transcription Rectal Mucosa Donor 29 rectum
32 chr5:80111400-80131800 Weak transcription Hela-S3 cervix
33 chr5:80111600-80124200 Weak transcription Duodenum Smooth Muscle Duodenum
34 chr5:80112000-80123800 Weak transcription Duodenum Mucosa Duodenum
35 chr5:80112200-80124400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr5:80113200-80123800 Weak transcription Primary monocytes fromperipheralblood blood
37 chr5:80113200-80124000 Weak transcription Primary T cells fromperipheralblood blood
38 chr5:80113200-80125200 Weak transcription Fetal Kidney kidney
39 chr5:80113200-80128200 Weak transcription HSMM muscle
40 chr5:80114000-80124600 Weak transcription Fetal Stomach stomach
41 chr5:80117000-80124200 Weak transcription Skeletal Muscle Male skeletal muscle
42 chr5:80117800-80124000 Weak transcription Brain Inferior Temporal Lobe brain
43 chr5:80118000-80123800 Weak transcription Liver Liver
44 chr5:80118200-80124000 Weak transcription Breast Myoepithelial Primary Cells Breast
45 chr5:80118800-80123400 Weak transcription Primary B cells from cord blood blood
46 chr5:80118800-80124400 Weak transcription Primary T cells from cord blood blood
47 chr5:80118800-80124400 Weak transcription Left Ventricle heart
48 chr5:80118800-80124600 Weak transcription Aorta Aorta
49 chr5:80119000-80124400 Weak transcription Primary hematopoietic stem cells blood
50 chr5:80119000-80124800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015