The 2.0 version of rSNPBase

Variant report

Variant rs245385
Chromosome Location chr5:80128605-80128606
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:80042800-80173400 Weak transcription Right Ventricle heart
2 chr5:80087400-80132800 Weak transcription Primary T killer memory cells from peripheral blood blood
3 chr5:80087800-80167400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
4 chr5:80091200-80144400 Weak transcription Stomach Smooth Muscle stomach
5 chr5:80091400-80181000 Weak transcription Small Intestine intestine
6 chr5:80103800-80144600 Weak transcription Gastric stomach
7 chr5:80110600-80145200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
8 chr5:80111400-80131800 Weak transcription Hela-S3 cervix
9 chr5:80119000-80145000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr5:80120800-80143800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
11 chr5:80121200-80130400 Weak transcription Stomach Mucosa stomach
12 chr5:80125000-80141600 Weak transcription Primary monocytes fromperipheralblood blood
13 chr5:80125000-80141600 Weak transcription Ovary ovary
14 chr5:80125000-80142000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
15 chr5:80125000-80142000 Weak transcription Fetal Stomach stomach
16 chr5:80125000-80142200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr5:80125000-80142200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr5:80125000-80142200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
19 chr5:80125000-80143600 Weak transcription Left Ventricle heart
20 chr5:80125000-80143800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
21 chr5:80125000-80144600 Weak transcription Rectal Mucosa Donor 29 rectum
22 chr5:80125000-80145000 Weak transcription Aorta Aorta
23 chr5:80125200-80129800 Weak transcription Breast Myoepithelial Primary Cells Breast
24 chr5:80125200-80132600 Weak transcription GM12878-XiMat blood
25 chr5:80125200-80132800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
26 chr5:80125200-80133600 Weak transcription Primary T cells from cord blood blood
27 chr5:80125200-80141600 Weak transcription Monocytes-CD14+_RO01746 blood
28 chr5:80125200-80142000 Weak transcription Fetal Intestine Small intestine
29 chr5:80125200-80143800 Weak transcription Fetal Muscle Leg muscle
30 chr5:80125200-80144200 Weak transcription Primary B cells from peripheral blood blood
31 chr5:80125200-80144400 Weak transcription Primary T regulatory cells fromperipheralblood blood
32 chr5:80125200-80144400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr5:80125200-80145000 Weak transcription Primary T helper cells fromperipheralblood blood
34 chr5:80125200-80145000 Weak transcription Adipose Nuclei Adipose
35 chr5:80125200-80145400 Weak transcription Sigmoid Colon Sigmoid Colon
36 chr5:80125200-80151400 Weak transcription Rectal Mucosa Donor 31 rectum
37 chr5:80125200-80161600 Weak transcription Skeletal Muscle Female skeletal muscle
38 chr5:80125400-80130800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr5:80125400-80130800 Weak transcription Brain Hippocampus Middle brain
40 chr5:80125400-80141800 Weak transcription Liver Liver
41 chr5:80125400-80143800 Weak transcription Primary hematopoietic stem cells blood
42 chr5:80125400-80144200 Weak transcription Duodenum Smooth Muscle Duodenum
43 chr5:80125400-80145000 Weak transcription HepG2 liver
44 chr5:80125400-80145200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr5:80125600-80133600 Weak transcription Primary B cells from cord blood blood
46 chr5:80125600-80144200 Weak transcription Duodenum Mucosa Duodenum
47 chr5:80125800-80143800 Weak transcription Primary hematopoietic stem cells short term culture blood
48 chr5:80125800-80145000 Weak transcription Fetal Lung lung
49 chr5:80126600-80130600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
50 chr5:80128000-80145400 Weak transcription Brain Substantia Nigra brain

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Last update: Aug 31, 2015