The 2.0 version of rSNPBase

Variant report

Variant rs32968
Chromosome Location chr5:80178884-80178885
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:80091400-80181000 Weak transcription Small Intestine intestine
2 chr5:80145600-80181000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
3 chr5:80149800-80180000 Weak transcription Psoas Muscle Psoas
4 chr5:80152800-80179000 Weak transcription Rectal Smooth Muscle rectum
5 chr5:80157600-80180000 Weak transcription iPS-18 Cell Line embryonic stem cell
6 chr5:80163000-80181400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
7 chr5:80163200-80180000 Weak transcription Fetal Kidney kidney
8 chr5:80163200-80186600 Weak transcription HSMMtube muscle
9 chr5:80163200-80188400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr5:80167800-80180800 Weak transcription K562 blood
11 chr5:80167800-80187200 Weak transcription H1 Cell Line embryonic stem cell
12 chr5:80169600-80190600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
13 chr5:80171200-80183600 Weak transcription Primary hematopoietic stem cells blood
14 chr5:80171200-80186400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
15 chr5:80171400-80196400 Weak transcription Hela-S3 cervix
16 chr5:80171800-80186800 Weak transcription Cortex derived primary cultured neurospheres brain
17 chr5:80172000-80180000 Weak transcription iPS-20b Cell Line embryonic stem cell
18 chr5:80172200-80186400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr5:80173200-80181000 Weak transcription Primary T helper naive cells fromperipheralblood blood
20 chr5:80173600-80181400 Weak transcription Ovary ovary
21 chr5:80173600-80208000 Weak transcription Brain Inferior Temporal Lobe brain
22 chr5:80173800-80179000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr5:80173800-80181200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr5:80173800-80186200 Weak transcription Fetal Brain Female brain
25 chr5:80173800-80188600 Weak transcription Primary T helper cells PMA-I stimulated --
26 chr5:80174000-80180000 Weak transcription Brain Substantia Nigra brain
27 chr5:80174000-80180000 Weak transcription Fetal Adrenal Gland Adrenal Gland
28 chr5:80174000-80180200 Weak transcription Fetal Intestine Large intestine
29 chr5:80174000-80180400 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr5:80174000-80180600 Weak transcription Fetal Intestine Small intestine
31 chr5:80174000-80181000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr5:80174000-80181000 Weak transcription NHEK skin
33 chr5:80174000-80181400 Weak transcription HUES48 Cell Line embryonic stem cell
34 chr5:80174000-80181400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr5:80174000-80181400 Weak transcription Osteobl bone
36 chr5:80174000-80183000 Weak transcription Gastric stomach
37 chr5:80174000-80185000 Weak transcription Thymus Thymus
38 chr5:80174000-80185000 Weak transcription Dnd41 blood
39 chr5:80174000-80185600 Weak transcription Lung lung
40 chr5:80174000-80186400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
41 chr5:80174000-80186400 Weak transcription Stomach Smooth Muscle stomach
42 chr5:80174000-80186600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr5:80174000-80186600 Weak transcription Fetal Lung lung
44 chr5:80174000-80186800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
45 chr5:80174000-80187200 Weak transcription Rectal Mucosa Donor 31 rectum
46 chr5:80174000-80187200 Weak transcription Right Ventricle heart
47 chr5:80174000-80188200 Weak transcription Fetal Muscle Trunk muscle
48 chr5:80174000-80188400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
49 chr5:80174000-80188400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
50 chr5:80174000-80188600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin

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Last update: Aug 31, 2015