Variant report

Variant	rs1316512
Chromosome Location	chr1:225019623-225019624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:225019310..225022612-chr1:225026038..225029818,3	K562	blood:
2	chr1:225018962..225021561-chr1:225021627..225023637,2	MCF-7	breast:
3	chr1:225018653..225020810-chr1:225024865..225027538,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10495228	0.83[LWK][hapmap];0.88[YRI][hapmap]
rs12097622	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12563857	1.00[YRI][hapmap]
rs12565439	1.00[YRI][hapmap]
rs12566857	1.00[YRI][hapmap]
rs12567091	1.00[YRI][hapmap]
rs12567499	1.00[YRI][hapmap]
rs1361923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1436166	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1436176	0.82[MEX][hapmap]
rs1506070	1.00[YRI][hapmap]
rs16856396	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16856435	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16856463	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16856829	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16858661	1.00[YRI][hapmap]
rs16858758	0.83[LWK][hapmap];1.00[YRI][hapmap]
rs16858829	0.88[YRI][hapmap]
rs16858831	1.00[YRI][hapmap]
rs16858932	1.00[YRI][hapmap]
rs16858962	1.00[YRI][hapmap]
rs1806563	0.84[ASN][1000 genomes]
rs1892121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1905115	1.00[YRI][hapmap]
rs1936632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1961688	1.00[YRI][hapmap]
rs1982707	1.00[YRI][hapmap]
rs2016652	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2252950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2291227	1.00[YRI][hapmap]
rs2298257	0.89[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2501078	0.82[JPT][hapmap]
rs2574874	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2574876	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2662924	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2662925	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2662927	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2662929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2800234	0.82[ASN][1000 genomes]
rs2802552	0.87[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2802556	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2802558	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2802559	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2802562	1.00[ASW][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];0.87[YRI][hapmap]
rs2802563	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2802568	0.82[EUR][1000 genomes]
rs2802732	0.82[EUR][1000 genomes]
rs2802733	0.80[EUR][1000 genomes]
rs2802744	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2997478	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2997501	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3012182	1.00[ASW][hapmap];0.89[CEU][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs4587536	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs55752315	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs56237431	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61540517	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6697156	1.00[YRI][hapmap]
rs7523949	1.00[YRI][hapmap]
rs7531542	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524125	chr1:224902054-225021860	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225017400-225019800	Enhancers	Ovary	ovary
2	chr1:225017600-225020600	Enhancers	Fetal Brain Male	brain
3	chr1:225018400-225019800	Enhancers	Adipose Nuclei	Adipose
4	chr1:225018600-225025800	Weak transcription	Pancreas	Pancrea
5	chr1:225019000-225019800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:225019000-225020200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:225019000-225020200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr1:225019200-225019800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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