Variant report

Variant	rs1406898
Chromosome Location	chr6:109824440-109824441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109822082..109824887-chr6:109829770..109832005,2	K562	blood:
2	chr6:109822779..109824533-chr6:109824683..109826251,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253037	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1321329	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1535419	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1535420	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1570391	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17070494	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17070632	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17070657	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17070666	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17070692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17070701	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17070705	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17070733	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070737	1.00[CEU][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070740	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070743	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070774	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17070803	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs17070833	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2273896	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2356818	0.86[EUR][1000 genomes]
rs3778479	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3799836	0.86[EUR][1000 genomes]
rs3799844	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3799848	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3823233	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41439948	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4454171	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57181024	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57996937	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58273806	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58630019	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58731181	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59203807	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59579490	0.83[ASN][1000 genomes]
rs59626863	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60108304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60927725	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61374793	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61522207	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61671496	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6905490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73520933	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9487130	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487131	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487143	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9791294	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109815800-109837200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:109819800-109824800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:109819800-109828200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:109819800-109828200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:109820200-109824600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:109820200-109824800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:109820400-109824800	Weak transcription	Fetal Kidney	kidney
8	chr6:109822400-109826000	Enhancers	Placenta	Placenta
9	chr6:109823000-109825000	Enhancers	HSMM	muscle
10	chr6:109823400-109824800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:109823400-109834600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:109823800-109828200	Weak transcription	Primary T cells from cord blood	blood
13	chr6:109824000-109824600	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr6:109824000-109825000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:109824000-109825400	Enhancers	Fetal Muscle Leg	muscle
16	chr6:109824400-109825200	Enhancers	HSMMtube	muscle
17	chr6:109824400-109825400	Enhancers	Liver	Liver
18	chr6:109824400-109826200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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