Variant report

Variant	rs1570391
Chromosome Location	chr6:109786200-109786201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109783199..109786960-chr6:109788054..109790387,4	K562	blood:
2	chr6:109784664..109786892-chr6:109802855..109804831,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112365	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1321329	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1406898	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17070494	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17070632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17070657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17070666	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17070692	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070705	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17070733	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17070737	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17070740	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17070743	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17070774	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17070803	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2273896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2356818	0.86[EUR][1000 genomes]
rs3778479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3799836	0.86[EUR][1000 genomes]
rs3823233	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41439948	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4454171	0.86[EUR][1000 genomes]
rs57181024	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57996937	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58273806	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58630019	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58731181	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59203807	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59626863	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60108304	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60927725	0.86[EUR][1000 genomes]
rs61374793	0.86[EUR][1000 genomes]
rs61522207	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61671496	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6905490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73520933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487130	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9487131	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9487143	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9791294	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:134 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109777800-109786800	Weak transcription	Gastric	stomach
2	chr6:109777800-109786800	Weak transcription	Ovary	ovary
3	chr6:109778000-109786800	Weak transcription	Pancreas	Pancrea
4	chr6:109778000-109786800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:109778200-109786600	Weak transcription	Fetal Heart	heart
6	chr6:109778200-109786800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:109778200-109786800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:109778200-109786800	Weak transcription	Fetal Brain Male	brain
9	chr6:109778200-109787000	Weak transcription	Colon Smooth Muscle	Colon
10	chr6:109778400-109786800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:109778400-109787000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:109778400-109791400	Weak transcription	Colonic Mucosa	Colon
13	chr6:109778800-109786800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:109778800-109798800	Weak transcription	Small Intestine	intestine
15	chr6:109779000-109786600	Weak transcription	Brain Germinal Matrix	brain
16	chr6:109779000-109786800	Weak transcription	Aorta	Aorta
17	chr6:109779000-109786800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:109779000-109787000	Weak transcription	Esophagus	oesophagus
19	chr6:109779000-109787000	Weak transcription	Right Atrium	heart
20	chr6:109779000-109787000	Weak transcription	Right Ventricle	heart
21	chr6:109779200-109786800	Weak transcription	Psoas Muscle	Psoas
22	chr6:109779400-109786600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr6:109779400-109786800	Weak transcription	Fetal Intestine Small	intestine
24	chr6:109780200-109786800	Weak transcription	Spleen	Spleen
25	chr6:109780600-109786400	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr6:109780600-109800400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:109781400-109802200	Strong transcription	HSMM	muscle
28	chr6:109782000-109798800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr6:109782000-109799000	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:109782200-109788000	Strong transcription	Primary B cells from cord blood	blood
31	chr6:109782200-109792400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr6:109782400-109786600	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr6:109782400-109787000	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr6:109782400-109787000	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr6:109782400-109789000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:109782400-109790600	Strong transcription	Fetal Thymus	thymus
37	chr6:109782400-109797600	Strong transcription	Dnd41	blood
38	chr6:109782400-109797800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:109782400-109798000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:109782400-109798200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:109782400-109798800	Strong transcription	H1 Cell Line	embryonic stem cell
42	chr6:109782400-109798800	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr6:109782400-109798800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
44	chr6:109782400-109798800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr6:109782400-109799000	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr6:109782400-109799000	Strong transcription	Placenta	Placenta
47	chr6:109782400-109799200	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr6:109782400-109799800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr6:109782400-109799800	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr6:109782400-109800000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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