Variant report

Variant	rs2356818
Chromosome Location	chr6:109688618-109688619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109625270..109626980-chr6:109687907..109689980,2	K562	blood:
2	chr6:109415407..109417436-chr6:109687702..109689598,2	MCF-7	breast:
3	chr6:109684963..109689881-chr6:109693239..109697523,6	MCF-7	breast:
4	chr6:109687588..109690401-chr6:109719781..109721950,2	K562	blood:
5	chr6:109682199..109685973-chr6:109687053..109690833,5	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CD164-1	chr6:109687717-109690220	NONHSAT114396

No data

Variant related genes	Relation type
ENSG00000201023	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000183137	Chromatin interaction
ENSG00000080546	Chromatin interaction

rs_ID	r²[population]
rs1406898	0.86[EUR][1000 genomes]
rs1570391	0.86[EUR][1000 genomes]
rs17070494	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17070632	0.86[EUR][1000 genomes]
rs17070657	0.86[EUR][1000 genomes]
rs17070666	0.86[EUR][1000 genomes]
rs17070692	0.86[EUR][1000 genomes]
rs17070701	0.86[EUR][1000 genomes]
rs17070705	0.86[EUR][1000 genomes]
rs2273896	0.86[EUR][1000 genomes]
rs3778479	0.86[EUR][1000 genomes]
rs3799836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41439948	0.86[EUR][1000 genomes]
rs57996937	0.86[EUR][1000 genomes]
rs58273806	0.86[EUR][1000 genomes]
rs58630019	0.80[EUR][1000 genomes]
rs60108304	0.86[EUR][1000 genomes]
rs6905490	0.86[EUR][1000 genomes]
rs73520933	0.86[EUR][1000 genomes]
rs9487130	0.86[EUR][1000 genomes]
rs9487131	0.86[EUR][1000 genomes]
rs9487143	0.86[EUR][1000 genomes]

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109675000-109691800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:109675000-109692600	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:109675000-109693200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr6:109675000-109694400	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr6:109675000-109694600	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr6:109675000-109700800	Strong transcription	Placenta	Placenta
7	chr6:109675200-109688800	Strong transcription	Primary T cells from cord blood	blood
8	chr6:109675200-109693200	Strong transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:109675400-109691400	Strong transcription	Osteobl	bone
10	chr6:109676800-109693800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:109677000-109698200	Strong transcription	Fetal Intestine Large	intestine
12	chr6:109677600-109695000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:109677800-109700600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:109678200-109691400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:109678200-109694600	Strong transcription	Fetal Thymus	thymus
16	chr6:109678200-109695200	Strong transcription	Duodenum Mucosa	Duodenum
17	chr6:109678400-109694400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:109678400-109694400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:109678600-109693200	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr6:109678600-109693400	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr6:109678800-109695400	Strong transcription	Rectal Mucosa Donor 31	rectum
22	chr6:109678800-109699000	Strong transcription	Dnd41	blood
23	chr6:109679000-109693200	Strong transcription	K562	blood
24	chr6:109679200-109700400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:109679400-109689000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr6:109679400-109700600	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:109680400-109697200	Weak transcription	Fetal Brain Male	brain
28	chr6:109680600-109700600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:109680800-109694400	Strong transcription	Primary B cells from peripheral blood	blood
30	chr6:109681000-109689400	Weak transcription	Brain Angular Gyrus	brain
31	chr6:109682400-109692600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:109682600-109700800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr6:109683200-109699800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr6:109683600-109692800	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr6:109683800-109693400	Strong transcription	Primary B cells from cord blood	blood
36	chr6:109683800-109700600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:109684000-109689200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr6:109684000-109689800	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr6:109684000-109691000	Weak transcription	Fetal Brain Female	brain
40	chr6:109684000-109691200	Weak transcription	HSMMtube	muscle
41	chr6:109684000-109691400	Weak transcription	Brain Germinal Matrix	brain
42	chr6:109684000-109691600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr6:109684000-109692000	Weak transcription	Esophagus	oesophagus
44	chr6:109684000-109692800	Weak transcription	NHLF	lung
45	chr6:109684000-109693200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr6:109684000-109693400	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr6:109684000-109693400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr6:109684000-109693400	Weak transcription	Stomach Mucosa	stomach
49	chr6:109684000-109694600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr6:109684000-109694600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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