Variant report

Variant	rs3778479
Chromosome Location	chr6:109801941-109801942
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109766673..109769201-chr6:109798430..109801986,3	MCF-7	breast:
2	chr6:109759652..109764361-chr6:109800705..109806354,8	K562	blood:
3	chr6:109774016..109776250-chr6:109801827..109803875,2	K562	blood:
4	chr6:109774750..109777186-chr6:109800628..109803875,3	K562	blood:
5	chr6:109785634..109787468-chr6:109799694..109802286,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135587	Chromatin interaction
ENSG00000185250	Chromatin interaction
ENSG00000135596	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1321329	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1406898	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1535419	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1535420	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1570391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17070494	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17070632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17070657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17070666	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17070692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070705	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17070733	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17070737	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17070740	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17070743	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17070774	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17070803	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17070833	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2273896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2356818	0.86[EUR][1000 genomes]
rs3799836	0.86[EUR][1000 genomes]
rs3799844	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3823233	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41439948	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4454171	0.86[EUR][1000 genomes]
rs57181024	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57996937	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58273806	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58630019	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58731181	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59203807	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59626863	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60108304	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60927725	0.86[EUR][1000 genomes]
rs61374793	0.86[EUR][1000 genomes]
rs61522207	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61671496	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6905490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73520933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487130	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9487131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9487143	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9791294	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109781400-109802200	Strong transcription	HSMM	muscle
2	chr6:109782400-109803000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:109789400-109803200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:109795200-109802400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:109797800-109803400	Transcr. at gene 5' and 3'	Dnd41	blood
6	chr6:109798000-109803400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:109798000-109803400	Genic enhancers	Fetal Thymus	thymus
8	chr6:109798200-109802200	Weak transcription	Gastric	stomach
9	chr6:109798200-109803000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:109798600-109802600	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr6:109798600-109802800	Transcr. at gene 5' and 3'	Primary T cells from cord blood	blood
12	chr6:109798600-109803400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
13	chr6:109798800-109802400	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
14	chr6:109799000-109803000	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
15	chr6:109799200-109802200	Enhancers	Brain Hippocampus Middle	brain
16	chr6:109799200-109802200	Weak transcription	Fetal Stomach	stomach
17	chr6:109799200-109803000	Weak transcription	Colonic Mucosa	Colon
18	chr6:109799200-109803400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:109799200-109803400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:109799200-109803400	Weak transcription	Esophagus	oesophagus
21	chr6:109799600-109802200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
22	chr6:109799600-109803800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr6:109799800-109803200	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
24	chr6:109799800-109803400	Enhancers	Ovary	ovary
25	chr6:109800000-109803200	Genic enhancers	Monocytes-CD14+_RO01746	blood
26	chr6:109800000-109803400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:109800200-109802000	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr6:109800200-109803000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:109800400-109802000	Transcr. at gene 5' and 3'	H1 Cell Line	embryonic stem cell
30	chr6:109800400-109803200	Transcr. at gene 5' and 3'	K562	blood
31	chr6:109800600-109802600	Genic enhancers	Fetal Brain Female	brain
32	chr6:109800600-109803200	Genic enhancers	Primary hematopoietic stem cells	blood
33	chr6:109800800-109802000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:109800800-109802200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:109800800-109802800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:109800800-109803000	Genic enhancers	NHDF-Ad	bronchial
37	chr6:109800800-109803200	Genic enhancers	Primary B cells from peripheral blood	blood
38	chr6:109800800-109803400	Enhancers	Thymus	Thymus
39	chr6:109801000-109803200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:109801000-109803400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:109801200-109802000	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:109801200-109802000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
43	chr6:109801200-109802000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
44	chr6:109801200-109802000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
45	chr6:109801200-109802000	Flanking Active TSS	Psoas Muscle	Psoas
46	chr6:109801200-109802200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr6:109801200-109802200	Transcr. at gene 5' and 3'	Primary T killer memory cells from peripheral blood	blood
48	chr6:109801200-109802200	Enhancers	Fetal Intestine Small	intestine
49	chr6:109801200-109802200	Strong transcription	Lung	lung
50	chr6:109801200-109802200	Enhancers	Pancreas	Pancrea

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