Variant report

Variant	rs9487130
Chromosome Location	chr6:109825033-109825034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr6:109824889-109825216	NB4	blood:	n/a	n/a
2	STAT3	chr6:109824930-109825076	MCF10A-Er-Src	breast:	n/a	n/a
3	CEBPB	chr6:109824942-109825042	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr6:109824776-109825276	HL-60	blood:	n/a	n/a
5	MAX	chr6:109824842-109825107	NB4	blood:	n/a	n/a
6	CEBPB	chr6:109824835-109825162	HepG2	liver:	n/a	n/a
7	POLR2A	chr6:109824720-109825278	HL-60	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000253037	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1321329	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1406898	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535419	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1535420	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1570391	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17070494	0.86[EUR][1000 genomes]
rs17070632	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17070657	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17070666	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17070692	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17070701	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17070705	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17070733	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070737	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070740	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070743	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070774	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17070803	0.86[EUR][1000 genomes]
rs17070833	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2273896	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2356818	0.86[EUR][1000 genomes]
rs3778479	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3799836	0.86[EUR][1000 genomes]
rs3799844	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3799848	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3823233	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41439948	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4454171	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57181024	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57996937	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58273806	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58630019	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58731181	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59203807	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59579490	0.83[ASN][1000 genomes]
rs59626863	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60108304	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60927725	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61374793	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61522207	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61671496	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6905490	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73520933	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9487131	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487143	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9791294	0.88[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109815800-109837200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:109819800-109828200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:109819800-109828200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:109822400-109826000	Enhancers	Placenta	Placenta
5	chr6:109823400-109834600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:109823800-109828200	Weak transcription	Primary T cells from cord blood	blood
7	chr6:109824000-109825400	Enhancers	Fetal Muscle Leg	muscle
8	chr6:109824400-109825200	Enhancers	HSMMtube	muscle
9	chr6:109824400-109825400	Enhancers	Liver	Liver
10	chr6:109824400-109826200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:109824600-109825200	Bivalent Enhancer	HepG2	liver
12	chr6:109824600-109825400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:109824800-109825200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:109824800-109825200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:109824800-109825200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:109824800-109825200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:109824800-109825200	Enhancers	NHDF-Ad	bronchial
18	chr6:109824800-109825400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr6:109824800-109825400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:109824800-109825600	Enhancers	H1 Cell Line	embryonic stem cell
21	chr6:109825000-109825200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:109825000-109825200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:109825000-109825200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:109825000-109825200	Flanking Active TSS	Duodenum Mucosa	Duodenum
25	chr6:109825000-109825200	Enhancers	Lung	lung
26	chr6:109825000-109825400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:109825000-109826200	Weak transcription	HSMM	muscle
28	chr6:109825000-109829200	Weak transcription	Fetal Lung	lung
29	chr6:109825000-109837000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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