Variant report

Variant	rs6905490
Chromosome Location	chr6:109798783-109798784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109561439..109564870-chr6:109795296..109799146,3	K562	blood:
2	chr6:109771720..109774696-chr6:109798404..109799936,2	MCF-7	breast:
3	chr6:109764918..109767515-chr6:109797927..109799949,2	MCF-7	breast:
4	chr6:109766673..109769201-chr6:109798430..109801986,3	MCF-7	breast:
5	chr6:109783085..109784938-chr6:109797563..109800257,2	K562	blood:

Variant related genes	Relation type
ENSG00000135596	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1321329	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs1406898	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1570391	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17070494	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17070632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17070657	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17070666	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17070692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070701	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17070733	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17070737	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17070740	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17070743	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17070774	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17070803	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs2273896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2356818	0.86[EUR][1000 genomes]
rs3778479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3799836	0.86[EUR][1000 genomes]
rs3823233	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41439948	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4454171	0.86[EUR][1000 genomes]
rs57181024	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57996937	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58273806	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58630019	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58731181	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59203807	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59626863	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60108304	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60927725	0.86[EUR][1000 genomes]
rs61374793	0.86[EUR][1000 genomes]
rs61522207	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61671496	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73520933	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487130	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9487131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9487143	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9791294	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109778800-109798800	Weak transcription	Small Intestine	intestine
2	chr6:109780600-109800400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:109781400-109802200	Strong transcription	HSMM	muscle
4	chr6:109782000-109798800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:109782000-109799000	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:109782400-109798800	Strong transcription	H1 Cell Line	embryonic stem cell
7	chr6:109782400-109798800	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:109782400-109798800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:109782400-109798800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:109782400-109799000	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:109782400-109799000	Strong transcription	Placenta	Placenta
12	chr6:109782400-109799200	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr6:109782400-109799800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:109782400-109799800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr6:109782400-109800000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:109782400-109803000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:109782600-109799600	Strong transcription	Fetal Muscle Trunk	muscle
18	chr6:109782600-109800000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:109783200-109799800	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr6:109783600-109799000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:109785600-109799200	Strong transcription	Primary hematopoietic stem cells	blood
22	chr6:109785800-109798800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:109786200-109800200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:109786400-109799600	Strong transcription	Fetal Muscle Leg	muscle
25	chr6:109786600-109799200	Strong transcription	Fetal Stomach	stomach
26	chr6:109786800-109799200	Strong transcription	Stomach Smooth Muscle	stomach
27	chr6:109786800-109799800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr6:109787400-109799000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr6:109787600-109798800	Strong transcription	Skeletal Muscle Female	skeletal muscle
30	chr6:109787800-109798800	Weak transcription	Psoas Muscle	Psoas
31	chr6:109787800-109800600	Weak transcription	Fetal Heart	heart
32	chr6:109789200-109799000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:109789400-109803200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:109790600-109799000	Strong transcription	Fetal Brain Female	brain
35	chr6:109790800-109799200	Strong transcription	H9 Cell Line	embryonic stem cell
36	chr6:109791400-109798800	Strong transcription	Colonic Mucosa	Colon
37	chr6:109793600-109799200	Weak transcription	Fetal Brain Male	brain
38	chr6:109794200-109798800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr6:109794400-109798800	Weak transcription	Stomach Mucosa	stomach
40	chr6:109794400-109801200	Weak transcription	HSMMtube	muscle
41	chr6:109795000-109800000	Weak transcription	NH-A	brain
42	chr6:109795200-109798800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:109795200-109798800	Weak transcription	Spleen	Spleen
44	chr6:109795200-109802400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr6:109795800-109799200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr6:109796200-109799000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
47	chr6:109796400-109799200	Strong transcription	NHEK	skin
48	chr6:109796600-109798800	Strong transcription	Esophagus	oesophagus
49	chr6:109796800-109800000	Weak transcription	NHLF	lung
50	chr6:109797000-109798800	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--

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