Variant report

Variant	rs17070666
Chromosome Location	chr6:109837229-109837230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109837056..109838849-chr6:109842605..109844539,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1321329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1406898	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1535420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1570391	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17070494	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17070632	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17070657	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17070692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17070701	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17070705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17070733	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070737	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.95[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070774	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17070803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs17070833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17070875	0.86[EUR][1000 genomes]
rs2273896	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2356818	0.86[EUR][1000 genomes]
rs3778479	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3799836	0.86[EUR][1000 genomes]
rs3799844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3799848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3799850	0.86[EUR][1000 genomes]
rs3823233	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41439948	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4454171	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57181024	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57996937	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58273806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58630019	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58731181	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59203807	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59579490	0.83[ASN][1000 genomes]
rs59626863	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60108304	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60927725	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61374793	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61522207	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61671496	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6905490	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73520933	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9487130	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9791294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109834400-109837600	Enhancers	Osteobl	bone
2	chr6:109835400-109851400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:109835600-109844400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:109836600-109837600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:109836600-109837800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
6	chr6:109836600-109837800	Enhancers	Dnd41	blood
7	chr6:109836600-109838600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:109836600-109838600	Enhancers	Thymus	Thymus
9	chr6:109836800-109837400	Active TSS	Primary T cells fromperipheralblood	blood
10	chr6:109836800-109837400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
11	chr6:109836800-109837400	Active TSS	Primary T killer memory cells from peripheral blood	blood
12	chr6:109836800-109837400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:109836800-109837600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:109836800-109837600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
15	chr6:109836800-109837800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:109836800-109838000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:109836800-109838000	Flanking Active TSS	Primary hematopoietic stem cells	blood
18	chr6:109837000-109837400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
19	chr6:109837000-109837400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:109837000-109837400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:109837000-109837400	Active TSS	Pancreatic Islets	Pancreatic Islet
22	chr6:109837000-109837400	Active TSS	Rectal Mucosa Donor 29	rectum
23	chr6:109837000-109837600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
24	chr6:109837000-109837600	Enhancers	Primary B cells from peripheral blood	blood
25	chr6:109837000-109837600	Flanking Active TSS	Primary T cells from cord blood	blood
26	chr6:109837000-109837600	Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr6:109837000-109837600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:109837000-109837600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
29	chr6:109837000-109837600	Active TSS	Duodenum Mucosa	Duodenum
30	chr6:109837000-109837800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
31	chr6:109837000-109838000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr6:109837000-109838400	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr6:109837200-109837400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:109837200-109837600	Enhancers	Primary B cells from cord blood	blood
35	chr6:109837200-109837600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
36	chr6:109837200-109837600	Active TSS	Hela-S3	cervix
37	chr6:109837200-109837800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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