Variant report

Variant	rs73520933
Chromosome Location	chr6:109788426-109788427
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:109788262-109789413	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:109787055..109789260-chr6:109802525..109804653,2	K562	blood:
2	chr6:109783199..109786960-chr6:109788054..109790387,4	K562	blood:
3	chr6:109775385..109780026-chr6:109787394..109791434,6	K562	blood:
4	chr6:109775385..109779636-chr6:109787721..109791434,6	K562	blood:

Variant related genes	Relation type
MICAL1	TF binding region
ENSG00000135596	Chromatin interaction
ENSG00000112365	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1321329	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1406898	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1570391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17070494	0.86[EUR][1000 genomes]
rs17070632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17070657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17070666	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17070692	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070705	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17070733	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17070737	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17070740	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17070743	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17070774	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17070803	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2273896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2356818	0.86[EUR][1000 genomes]
rs3778479	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3799836	0.86[EUR][1000 genomes]
rs3823233	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41439948	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4454171	0.86[EUR][1000 genomes]
rs57181024	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57996937	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58273806	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58630019	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58731181	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59203807	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59626863	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60108304	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60927725	0.86[EUR][1000 genomes]
rs61374793	0.86[EUR][1000 genomes]
rs61522207	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61671496	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6905490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487130	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9487131	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9487143	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9791294	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109778400-109791400	Weak transcription	Colonic Mucosa	Colon
2	chr6:109778800-109798800	Weak transcription	Small Intestine	intestine
3	chr6:109780600-109800400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:109781400-109802200	Strong transcription	HSMM	muscle
5	chr6:109782000-109798800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:109782000-109799000	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:109782200-109792400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:109782400-109789000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:109782400-109790600	Strong transcription	Fetal Thymus	thymus
10	chr6:109782400-109797600	Strong transcription	Dnd41	blood
11	chr6:109782400-109797800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:109782400-109798000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:109782400-109798200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:109782400-109798800	Strong transcription	H1 Cell Line	embryonic stem cell
15	chr6:109782400-109798800	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:109782400-109798800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:109782400-109798800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:109782400-109799000	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:109782400-109799000	Strong transcription	Placenta	Placenta
20	chr6:109782400-109799200	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr6:109782400-109799800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr6:109782400-109799800	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr6:109782400-109800000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:109782400-109803000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:109782600-109789200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:109782600-109797800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:109782600-109799600	Strong transcription	Fetal Muscle Trunk	muscle
28	chr6:109782600-109800000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:109782800-109792600	Strong transcription	Primary B cells from peripheral blood	blood
30	chr6:109783000-109789400	Strong transcription	NHDF-Ad	bronchial
31	chr6:109783000-109797800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:109783000-109798000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:109783000-109798200	Strong transcription	Adipose Nuclei	Adipose
34	chr6:109783200-109799800	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr6:109783600-109799000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:109783800-109789000	Weak transcription	HSMMtube	muscle
37	chr6:109785000-109788800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:109785000-109794000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:109785200-109794800	Strong transcription	HMEC	breast
40	chr6:109785200-109796800	Strong transcription	Liver	Liver
41	chr6:109785600-109789800	Strong transcription	NHLF	lung
42	chr6:109785600-109797800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr6:109785600-109798200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:109785600-109799200	Strong transcription	Primary hematopoietic stem cells	blood
45	chr6:109785800-109789400	Strong transcription	HepG2	liver
46	chr6:109785800-109793200	Strong transcription	A549	lung
47	chr6:109785800-109796400	Strong transcription	Primary T cells from cord blood	blood
48	chr6:109785800-109798800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
49	chr6:109786000-109793000	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr6:109786000-109794600	Strong transcription	Primary T helper naive cells from peripheral blood	blood

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