Variant report

Variant	rs60108304
Chromosome Location	chr6:109836102-109836103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1321329	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1406898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535419	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1535420	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1570391	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17070494	0.86[EUR][1000 genomes]
rs17070632	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17070657	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17070666	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17070692	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17070701	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17070705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17070733	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070737	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070740	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070743	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070774	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17070803	0.86[EUR][1000 genomes]
rs17070833	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17070875	0.86[EUR][1000 genomes]
rs2273896	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2356818	0.86[EUR][1000 genomes]
rs3778479	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3799836	0.86[EUR][1000 genomes]
rs3799844	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3799848	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3799850	0.86[EUR][1000 genomes]
rs3823233	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41439948	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4454171	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57181024	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57996937	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58273806	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58630019	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58731181	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59203807	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59579490	0.83[ASN][1000 genomes]
rs59626863	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60927725	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61374793	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61522207	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61671496	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6905490	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73520933	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9487130	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487131	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9791294	0.88[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109815800-109837200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:109825000-109837000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:109832000-109836400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:109834000-109836400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:109834200-109836400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:109834400-109836200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:109834400-109837600	Enhancers	Osteobl	bone
8	chr6:109834600-109836200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr6:109834600-109836200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:109834800-109836600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr6:109835200-109836200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:109835200-109836200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:109835200-109836400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:109835200-109837000	Weak transcription	Hela-S3	cervix
15	chr6:109835400-109836200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:109835400-109836400	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr6:109835400-109837200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:109835400-109851400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:109835600-109836400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr6:109835600-109837200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:109835600-109844400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:109835800-109836400	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr6:109835800-109836600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:109836000-109836200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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